Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10493
Subject:
XR_001753718.2
Aligned Length:
2998
Identities:
543
Gaps:
2380

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGACCAGGAAGCGGATCCCGTGGAGTGAAGGTCGCACCGCGGCGGATTGACTTCTAAAGACTTGGTACGTGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGGGTCTACTGACATTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAAGCACTCATGACAAAAACCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTTGCATGCCATAGATGTCACACTGGTGAGAATCCTTACACGTGTAATGAGTGTGGCAAGACATTCAGTCACAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTTACAAGTGTAATGAGTGTGGCAAGACCTTTGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAG  1406

Query    1  --------------------------------ATGAATGTGGCAAGGTTTTTAGTAGAAAAGCACACCTTGCAT  42
                                            |||||||||||||||||||||.|.|||||.||.||||||.|.
Sbjct 1407  ACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAAC  1480

Query   43  GTCATCATAGACTTCATACTG--------TCT-----------------AAGGTTTCTAATCAACAATCAAACC  91
            |||||||||||||||||||||        |||                 |||||||.||..|||||.|||||||
Sbjct 1481  GTCATCATAGACTTCATACTGGAAAGAAATCTTAGAAGTGTAAATTTGCAAGGTTTTTAGGCAACAGTCAAACC  1554

Query   92  TTGCACAACATCAGAGAGTTTATACTGGAGAGAAACCT------------------------------------  129
            |||||...|||||.|||.||||||||||||||||||||                                    
Sbjct 1555  TTGCATGTCATCATAGACTTTATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAAGTTTTCAATTT  1628

Query  130  --------------------------------------------------------------------------  129
                                                                                      
Sbjct 1629  CAAATCACTCCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGG  1702

Query  130  -----------------------------------------------------------TACAAGTGTAATGAG  144
                                                                       |||||||||||||||
Sbjct 1703  ATTTCGGGTGTGATTCACACCTGGCCCAACATACTGGAATTCACACTGGAAAGGAACTGTACAAGTGTAATGAG  1776

Query  145  TGGGGCAAAGCCTTAAGTGGGAAGTCGTCACTTTTTTATCATCAAGCAATCCATGGTGTAGGGAAACTTTGCAA  218
            ||.||||.||||||..||||..||||..|||||..|.|.||||||||||||||||||.|||||||||||..|.|
Sbjct 1777  TGTGGCAGAGCCTTTGGTGGTCAGTCAACACTTACTCACCATCAAGCAATCCATGGTATAGGGAAACTTGACTA  1850

Query  219  ATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCACTGGAGAATCCGTAATGAAGACA  292
            |||||||||||||||||||||||||||||||..||||.||||||||||.||.||||||||||.|||||||| .|
Sbjct 1851  ATGTAATGATTGTCACAAAGTCTTCAGTAATATTACAGCCATTGCAAAACATTGGAGAATCCATAATGAAG-GA  1923

Query  293  GATCTTACAAGTGTAATAAATGTGGTAAAATTTTCAGACATCAATCATATCTTGCAGTTTATCAGCGAACTCAT  366
            |.|||||||||||||||||||||||.||..|||||||||||||.|||||.|||||||||.||..||||.||.||
Sbjct 1924  GGTCTTACAAGTGTAATAAATGTGGCAAGTTTTTCAGACATCATTCATAACTTGCAGTTCATTGGCGATCTTAT  1997

Query  367  ACTGGAGAGAAACCTTACAAATATCATGACTGTGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAG  440
            ||.|||||||||.|||||||||.|.||||.|||||||||||||||||||||||||||||.|.||||||||  .|
Sbjct 1998  ACAGGAGAGAAATCTTACAAATGTGATGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTTTTGCAAAAC--GG  2069

Query  441  GAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTG-GCAAAGTCTTGACTTCACGTTCACACCTC  513
            |||||||||||||||||||||||||||||||||||||||||||| ||||||.|||.||||||||||||||||.|
Sbjct 2070  GAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGAGCAAAGCCTTTACTTCACGTTCACACCAC  2143

Query  514  ATTAGACATCAGAGAATCCATACTGGACATAAATCTTACAAATGTCTTAAGTGTGGCAAGGTCTTCAGTCTGTG  587
            ||||||.|||||||.||||||||||||||.||||||||||||.|||.||.||||||||||||||||||||.|.|
Sbjct 2144  ATTAGATATCAGAGGATCCATACTGGACAGAAATCTTACAAACGTCCTATGTGTGGCAAGGTCTTCAGTCCGAG  2217

Query  588  GGCACTCCATGCAGAACATCAGAAAATTCATTTT----------------------------------------  621
            |..|||||.|||||||.||||.||..||||||||                                        
Sbjct 2218  GTTACTCCTTGCAGAATATCATAACGTTCATTTTTGAGGATTGATTTCCAAAGACTCATGCTATGTAAGGAAGC  2291

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2292  CACCAAGAAGGGCAAAGAAAAGGAGCCAGGGACGGCTCTTCCTCAGGGACACTAGACTTTCAGGGATGTGGCTA  2365

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2366  TAGATTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGAAGTGATGTTGGAG  2439

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2440  AACTACAGGAACCTGGAGTTTGTGGGGACATACGTGACATTTGGTGAGATGTGGGACAGGAGGACTCCTTCAGG  2513

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2514  AGACTGATCCCCTGTCCTGATCTCCATGAGGAGCTCCAGCTACGACCTCAGGTCCTCAGACCAACCAGCCCAAG  2587

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2588  GAACGTCTCACCAATTTCAAATTGGACAGGAATGTCAGGCCTCTGAGCCCAAGACTGCAGGTATACATCCAGAT  2661

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2662  GGCCTGAGGCAACCGAAAAGTACAAAAGAAGTGAAACAGCCAGCCCCTGTCTTAACTGATTGACCAACCTTATG  2735

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2736  ACTTTCCATTATGACTTGTTCCTGCCCTGCCCCAACTGATCGATCGACCTTGAGAAATTCTTCTGGACAATGAG  2809

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2810  TCTTATGATCTCCCCACAATGCACCTTGTGACGCTCTCCTCTGCTGACAATAGATAACCACCTTTAACTGTAAC  2883

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2884  TATCCACTGCTTACCCCAGGCCTATAAAACTGCCCCACCCCATCTCCTTTTGCTGACTTCTTTTTCAGACCCAG  2957

Query  622  --------------------------------------  621
                                                  
Sbjct 2958  TCTGCCTGCACCCAGGTGAAATAAACAGCCTTGTTGCT  2995

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