Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10493
Subject:
XR_002958314.1
Aligned Length:
4430
Identities:
534
Gaps:
3815

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTGAAGGTCACGTCGCCATGATATCTCTTCCAAATGCTTGATGAAAAAGGTGGAAGGGTCACTTGACCCAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGTTGAAGGCTGCAGTGAGCCCTGTTTTTGCCACCACACTCCAGCCTGGGATTGATTTCTAAAGACTCATGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGGGACGCTTGACTTTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATTCCTGAACCCTGCACAGAGGGCTTTGTACAGGGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGGATATCTCTTCCAAACACATGATGAAGGAGGTCTTGTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAGACATCAAAGTTATCACATTGGAGACT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTTCAACATCCCAAAGAATTTCCTGTAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACAAGCAATAC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGTAAAGAGTGTGGAAAGTCCTTCAGTTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACCTTACAAGTGTAATGAGTGTGGCAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGACTTCATACTGGAGTGAAACCTTACAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAACCATACTAGAATTCATAGTGGAGAGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAAGCCTTGCACGTCATCATATACTTCAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCAGAAATCAACCCTTGAGAGACATAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATACAGCTTTCACGTGTAATTCACAGCTGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATGAGTGTCGCAAGACCTTCAGCCGCAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTACAAGTGTAATCAGTGTGGCAATACCTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGAGAAATCTTACAAATGTACGGTTTGTA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTCACACTGCAAAGAAACCTTACAAGTGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCATCGTAGACTTCATACTGGAGAGAAACC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCTTGAGTCACATAAGAGAATTCATACTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGAATTCACAGCTGGCACGACATACAAGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACCTTCAGTTACAAGTCATCACTTGTATG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTGTGACAAGGCTTTCGTGTGTCGTTCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAACCTTACAAGTGTAGTGAGTGCAGCAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGTGTAACG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTAGACTTCATACTGGAGAGAAATCTTAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCAAGACATATTAGAATTCACACTGCAGA  2590

Query    1  -----------------ATGAATGTGGCAAGGTTTTTAGTAGAA-AAGCACACCTTGCATGTCATCATAGACTT  56
                             ||||||||||.||||.|||||.| ||| ||.||||||||.||.|||||||||||.||
Sbjct 2591  GAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAAT-GAACAATCACACCTTTCACGTCATCATAGAATT  2663

Query   57  CATAC------------------------------TGTCTAAGGTTTCTAATCAACAATCAAACCTTGCACAAC  100
            |||||                              ||.|.|||.|||| |.||...|||||.|||||..|..||
Sbjct 2664  CATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTC-AGTCGCAAATCACACCTTAAAAGAC  2736

Query  101  ATCAGAGAGTTTATACTGGAGAGAAACCTTACAAGTGTAATGAGTGGGGCAAAGCCTTAAGTGGGAAGTCGTCA  174
            ||..||.|.||.||||||||||||||||||||||||||||||||||.|||||||||||.||||....|||..||
Sbjct 2737  ATAGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGACCGGTCAACA  2810

Query  175  CTTTTTTATCATCAAGCAATCCATGGTGTAGGGAAACTTTGCA--AATGTAATGATTGTCACAAAGTCTTCAGT  246
            |||.||.|.|||||.|||||.||||||.|||||||| |||| |  |||.|||||||||||||||||||||||||
Sbjct 2811  CTTATTCACCATCAGGCAATTCATGGTATAGGGAAA-TTTG-ATTAATATAATGATTGTCACAAAGTCTTCAGT  2882

Query  247  AATGCTACAACCATTGCAAATCACTGGAGAATCCGTAATGAAGACAGATCTTACAAGTGTAATAAATGTGGTAA  320
            ||..|||||||.|||||||||||.||||||||||.|.|||||||.|.|||||...||||||||||||||||.|.
Sbjct 2883  AACACTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAATCTTCTGAGTGTAATAAATGTGGCAT  2956

Query  321  AATTTTCAGACATCAATCATATCTTGCAGTTTATCAGCGAACTCATACTGGAGAGAAACCTTACAAATATCATG  394
            ..|||||||||||...|||||..||||||||.||..||.|.|||||||||||||||||||||||||||.|||||
Sbjct 2957  GTTTTTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATACTGGAGAGAAACCTTACAAATGTCATG  3030

Query  395  ACTGTGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAGAATTCATACAGGAGAGAAACCTCAC  468
            |.||.|||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct 3031  ATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAAC--AGGAGAATTCATACAGGAGAGAAACCTCAC  3102

Query  469  AAGTGTGATGATTGTGGCAAAGTCTTGACTTCACGTTCACACCTCATTAGACATCAGAGAATCCATACTGGACA  542
            ||||||||||||||||||||||.|||.|||||||.||||||||||.||.|||||||||||||||||||||||||
Sbjct 3103  AAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGACATCAGAGAATCCATACTGGACA  3176

Query  543  TAAATCTTACAAATGTCTTAAGTGTGGCAAGGTCTTCAGTCTGTGGGCACTCCATGCAGAACATCAGAAAATTC  616
            .|||||||.||||||||.|.|||||||||||||||||||||.|.||.||||||.||||||||||.|||||||||
Sbjct 3177  GAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCTTGCAGAACATGAGAAAATTC  3250

Query  617  ATTTT---------------------------------------------------------------------  621
            |||||                                                                     
Sbjct 3251  ATTTTTGAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTGGTATGCCTGGGAAACATGGTGAGACCCCCGTT  3324

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3325  TCTGCAAAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCAGTATCAACTACTGTGGAGTCTGCAGT  3398

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3399  GGGAGGATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAATCATGCTACTGCACTCCAGCATGGTTG  3472

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3473  ACAGAGCAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGGTACAGGAATAATGAAGTCATTGATAG  3546

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3547  TTTATGAACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTGTAAATGAATAACTTATTTTGAGTTGT  3620

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3621  GACAAGACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCCACATCAGTTTTACAGAAAAAAAGTTA  3694

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3695  ATCTTGTTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATAGTCAGGAATTCAATAATAGCCTGGTT  3768

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3769  AACATGATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGCACAGTGGTGGGCACCTGTAATCCCAG  3842

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3843  CTACTCAAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGAAGTTTCGATGAGCCGGGATCCTGCCG  3916

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3917  TTGCACTCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAACAAACAAAAAGGTCTAGCCCCCTCTCC  3990

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3991  TCCTTTGTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATGTCTTCTCACAAGACTTTCAGGATTAA  4064

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4065  GCGGTTTCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTGGATTCGAATGAAAACTGGCAATAAAA  4138

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4139  TCAGGTCCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAGGAATTGCACGTGAGATGGCA  4212

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4213  CACATATTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAAAATGTCACTACCATCTGGAGACTTGG  4286

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4287  ACATGTTTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAACGCATTGGTTGGGTGGGTTCAGTAAT  4360

Query  622  ----------------------------------------------------------------  621
                                                                            
Sbjct 4361  AAACATGTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAATAGATTACCTAAATTTC  4424

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