Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10493
Subject:
XR_935832.3
Aligned Length:
4234
Identities:
534
Gaps:
3619

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGATTAACGCAAACCCGGAAGCGGATCGGGTGGAGTGAAGGTCACGTCGCCATGGATTGATTTCTAAAGACTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGATATCTCTTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAACACATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATCAAAGTTATCACATTGGAGACTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTCAAGAAGATGAAAGAAATGGCCATGAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACTCCACATATTTCAGATCAAAGGTGAAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAACATCCCAAAGAATTTCCTGTAGGCCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TAATTGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCAAGCTCTTTAATCACAAGCAATACCTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAGAGTGTGGAAAGTCCTTCAGTTACAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTACAAGTGTAATGAGTGTGGCAAGGTCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTTCATACTGGAGTGAAACCTTACAAATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCATACTAGAATTCATAGTGGAGAGAAAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCTTGCACGTCATCATATACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAGAAATCAACCCTTGAGAGACATAAGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGCTTTCACGTGTAATTCACAGCTGGCACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTGTCGCAAGACCTTCAGCCGCAGGTCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AAGTGTAATCAGTGTGGCAATACCTTCCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAATCTTACAAATGTACGGTTTGTAACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ACACTGCAAAGAAACCTTACAAGTGTAATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGAGTCACATAAGAGAATTCATACTGGAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATTCACAGCTGGCACGACATACAAGAATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTCAGTTACAAGTCATCACTTGTATGGCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGACAAGGCTTTCGTGTGTCGTTCCTATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTAATGAGTGCAGCAAGACCTTCAGTAACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTTACAAGTGTAGTGAGTGCAGCAAGACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGTGAGAAACCTTACAAGTGTAACGACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GACTTCATACTGGAGAGAAATCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCA  2368

Query    1  -------------------------------------------ATGAATGTGGCAAGGTTTTTAGTAGAA-AAG  30
                                                       ||||||||||.||||.|||||.| ||| ||.
Sbjct 2369  AGACATATTAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAAT-GAACAAT  2441

Query   31  CACACCTTGCATGTCATCATAGACTTCATAC------------------------------TGTCTAAGGTTTC  74
            ||||||||.||.|||||||||||.|||||||                              ||.|.|||.||||
Sbjct 2442  CACACCTTTCACGTCATCATAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTC  2515

Query   75  TAATCAACAATCAAACCTTGCACAACATCAGAGAGTTTATACTGGAGAGAAACCTTACAAGTGTAATGAGTGGG  148
             |.||...|||||.|||||..|..||||..||.|.||.||||||||||||||||||||||||||||||||||.|
Sbjct 2516  -AGTCGCAAATCACACCTTAAAAGACATAGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTG  2588

Query  149  GCAAAGCCTTAAGTGGGAAGTCGTCACTTTTTTATCATCAAGCAATCCATGGTGTAGGGAAACTTTGCA--AAT  220
            ||||||||||.||||....|||..|||||.||.|.|||||.|||||.||||||.|||||||| |||| |  |||
Sbjct 2589  GCAAAGCCTTTAGTGACCGGTCAACACTTATTCACCATCAGGCAATTCATGGTATAGGGAAA-TTTG-ATTAAT  2660

Query  221  GTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCACTGGAGAATCCGTAATGAAGACAGA  294
            .|||||||||||||||||||||||||||..|||||||.|||||||||||.||||||||||.|.|||||||.|.|
Sbjct 2661  ATAATGATTGTCACAAAGTCTTCAGTAACACTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAA  2734

Query  295  TCTTACAAGTGTAATAAATGTGGTAAAATTTTCAGACATCAATCATATCTTGCAGTTTATCAGCGAACTCATAC  368
            ||||...||||||||||||||||.|...|||||||||||...|||||..||||||||.||..||.|.|||||||
Sbjct 2735  TCTTCTGAGTGTAATAAATGTGGCATGTTTTTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATAC  2808

Query  369  TGGAGAGAAACCTTACAAATATCATGACTGTGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGA  442
            ||||||||||||||||||||.||||||.||.|||||||||||||||||||||||||||||||||||||  ||||
Sbjct 2809  TGGAGAGAAACCTTACAAATGTCATGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAAC--AGGA  2880

Query  443  GAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGTCTTGACTTCACGTTCACACCTCATT  516
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||.|||||||.||||||||||.||
Sbjct 2881  GAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTT  2954

Query  517  AGACATCAGAGAATCCATACTGGACATAAATCTTACAAATGTCTTAAGTGTGGCAAGGTCTTCAGTCTGTGGGC  590
            .|||||||||||||||||||||||||.|||||||.||||||||.|.|||||||||||||||||||||.|.||.|
Sbjct 2955  GGACATCAGAGAATCCATACTGGACAGAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTC  3028

Query  591  ACTCCATGCAGAACATCAGAAAATTCATTTT-------------------------------------------  621
            |||||.||||||||||.||||||||||||||                                           
Sbjct 3029  ACTCCTTGCAGAACATGAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTGGTATGC  3102

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3103  CTGGGAAACATGGTGAGACCCCCGTTTCTGCAAAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCA  3176

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3177  GTATCAACTACTGTGGAGTCTGCAGTGGGAGGATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAAT  3250

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3251  CATGCTACTGCACTCCAGCATGGTTGACAGAGCAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGG  3324

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3325  TACAGGAATAATGAAGTCATTGATAGTTTATGAACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTG  3398

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3399  TAAATGAATAACTTATTTTGAGTTGTGACAAGACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCC  3472

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3473  ACATCAGTTTTACAGAAAAAAAGTTAATCTTGTTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATA  3546

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3547  GTCAGGAATTCAATAATAGCCTGGTTAACATGATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGC  3620

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3621  ACAGTGGTGGGCACCTGTAATCCCAGCTACTCAAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGA  3694

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3695  AGTTTCGATGAGCCGGGATCCTGCCGTTGCACTCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAAC  3768

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3769  AAACAAAAAGGTCTAGCCCCCTCTCCTCCTTTGTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATG  3842

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3843  TCTTCTCACAAGACTTTCAGGATTAAGCGGTTTCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTG  3916

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3917  GATTCGAATGAAAACTGGCAATAAAATCAGGTCCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTC  3990

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3991  TATAAGGAATTGCACGTGAGATGGCACACATATTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAA  4064

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4065  AATGTCACTACCATCTGGAGACTTGGACATGTTTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAA  4138

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4139  CGCATTGGTTGGGTGGGTTCAGTAATAAACATGTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAAT  4212

Query  622  ----------------  621
                            
Sbjct 4213  AGATTACCTAAATTTC  4228

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