Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10494
- Subject:
- NR_136511.2
- Aligned Length:
- 3532
- Identities:
- 1253
- Gaps:
- 2076
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA 148
Query 1 -----------ATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 222
Query 64 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 296
Query 138 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 370
Query 212 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 444
Query 286 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 518
Query 360 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT 592
Query 434 TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA 666
Query 508 AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAGTTTTAGATGTTGAGACTGGAAATGAG-TATGGGA 580
|||||||||||||||||||||||||||||||||||||||| || ||| |.|..|| ||
Sbjct 667 AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAG-----GA-----AGA----AGACCAGCTA----- 721
Query 581 ATTTAAAGCAA-GAAGT--TTCTGAAGAAAT-----GGAACCACA---TGG---GAA---------GA------ 625
||| |||.| ||||||| |||| .|||||.|| ||| ||| ||
Sbjct 722 --------CAAGGAAATACTTCTGAA-AAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTC 786
Query 626 -CA-TCCAGTAAATTTGAAAATGATATGTCCAAGTCTGCTAGGTGT----GGAGA-AACTC-----GTGAACCT 687
|| ||||| |||| .||| ||| ||| ||||| |.||| |||| ||
Sbjct 787 TCATTCCAG----------AATG------GCAA-TCT------TGTTTCAGGAGAGATCTCTAATAGTGA--CT 835
Query 688 GAAGAAATAACAGAAGAGCCCTCTGCTTGCTCCAGAGAA-------GATAAACAA-------------CCT--A 739
||.| .|||..|||||...||.|||.|....||.|||| |..|||.|| ||| |
Sbjct 836 GATG--GTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAA 907
Query 740 CCTGTGATGAAAATGGAGTAAGCCTGACTGAGAACTCTGACCATA-----CTGAACAT--CAGAGAATCTGTCC 806
.|| |.|||.|| || ||| |||||...||| |||.||.| ||||| |||||
Sbjct 908 ACT----TTAAATTG--------CT-ACT-----CTCTGGAGATAGCTACCTGGACTTTACAGAG---CTGTC- 959
Query 807 AGGAGAAGAATCTTACGGATGTGATGACTG---TGGAAAAGCTTTTAGTCAG-CACTCACACCTCATAGAACAT 876
|||||| ||| .|||.|...||.|.| ||||||| || ||||...||.|||
Sbjct 960 ---AGAAGA--CTT-GGGAAGGTTTGCCAGCATTGGAAAA----------AGCCACTTGGACTTCA-------- 1009
Query 877 CAGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGAATGTGGAAAAGCTTT--CCGTGGGAGAACTGTG 948
||||| ||| |..|||||.|..|| ||||||| |.||.|
Sbjct 1010 CAGAG--------CTG-----------------TCAGAAGACTTAGG--AAGCTTTGCCAGTAG---------- 1046
Query 949 CTTATTC--GACACAAAATAATACACACTGGAGAGAAACCGTATAAGTGTAATGAA-----TG-TGGCAAAGCC 1014
||| ||.||.|.| |||||| |.|.||||| || |||.|.||.|
Sbjct 1047 ----TTCCTGAGACCAGA-AATACA----------------------TATTATGAAGCAGGTGCTGGAACAGGC 1093
Query 1015 TTTGGCCGGTGGTCAGCTCTTAACCAACATCAGAGACTTCACACA-------------GGAGAA--AAACACTA 1073
..||||| ||.||.|..||..||.||.|.| .||||| ||||
Sbjct 1094 CCTGGCC----------------CCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAAC---- 1147
Query 1074 TCACTGTAATGACTGTGGC----AAAGCCTTTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCACACA 1143
|||.|||| |||| ||| ||.|| ||.|.|||.|||...|.|
Sbjct 1148 ------TAAGGACT-TGGCTCCAAAA---------CAAAA----------------CAAAACAAAATCTGGAGA 1189
Query 1144 AG---------------------------AGA----CAAACCTTATCAGTGCACTCAGTGTAATAAAAGTTTTA 1186
.| ||| ||| .||||.||||.|.||||||.||||||.||||
Sbjct 1190 TGCTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAA----CATCAATGCAGTAAGTGTAGTAAAAGCTTTA 1259
Query 1187 GT---CGGCGTTCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGA------------- 1244
|| .||.|...|| |||||||||||||.|||||.|| || ||||
Sbjct 1260 GTTTATGGTGAGTCA---TTACTCAGCATCATGGAGTCCA---CG------------ATGAAGAGAATCTCTTT 1315
Query 1245 -------GTG----CAACGAG-TGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCC 1306
||| ||||.|| |.|.||||.||.||||||||||....|.||||..||||||...||.|.|.||
Sbjct 1316 TCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCCTAGAAGAACC 1389
Query 1307 ACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAG 1380
|||||||.||||||||||.|||...||||||||||||||||...|||||.||.| ||||||||||...|.|||.
Sbjct 1390 ACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACA-TGGCCTTATTTGACTTCAA 1462
Query 1381 AGAATTCACACTG-GGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTA 1453
|||||.|||| || |.||.|.||...|.||||||.| ||..|||..|.||||||.|||| .|||
Sbjct 1463 AGAATCCACA-TGAGAGAGAGACTGCATAAATGTAA--TAACTGAGGAGGCCTTTGTTCA----GCAA------ 1523
Query 1454 CAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCA-AAG 1526
|||| |.|..||.||.||| |.|||||| .|.|||.|||||.|.||.||.|| |||
Sbjct 1524 -AGAA----ACCTTATACAAACT----------CGTATAAA------GAATGTAGGAAGACCTTCACCCAGAAG 1576
Query 1527 ATCAGTCCTCACGGAACATCAGAGAATC--CACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGC 1598
.|||..||.||.|..||.||||||||| |||| |.||...||||||.|||||..||||
Sbjct 1577 -CCAGGACTGACTGTGCACCAGAGAATCTGCACA---------------ATAAACATGATGAATGTGGAGATGC 1634
Query 1599 CTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGT 1672
.|.| ||||||||..||||||.||||.|...|.|||.||||.|||.||||||||||
Sbjct 1635 TTGC-------------------TTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTGCCAGTGTGATGAGT 1689
Query 1673 GTGGAAAAGCCTTCAGACAGAGGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAA 1746
..|||||||.|||||||....||| ||||..|||||||||.|
Sbjct 1690 ACGGAAAAGTCTTCAGAGGTTGGA----------------------ACTTGGGAAAAATCAGT----------- 1730
Query 1747 GCTGGAGTGAATCTTCTCCT------GAGCTCTCTCATTCCAGAATG----------GCAATCTTGNTTCAG-- 1802
|||||||| ||.| ||| .||||.|| .|||| |.||.||||..| ||
Sbjct 1731 ----GAGTGAAT----TCATATTAGAGAG-GCTCTTAT----AAATGAGAGGATTGTGGAAACTTGTAT-AGAC 1790
Query 1803 -GAG---AGATCTC------------------------------------------------------------ 1812
||| |||.|||
Sbjct 1791 AGAGATCAGACCTCAACAAGGGAGCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGT 1864
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 1865 ATGGGGAATGGGTAGTCTAAATTGCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAG 1938
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 1939 GAAATGTTAGAAGTTATTTTTCCCTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTG 2012
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2013 CATCTCTGGATTTGTGATCTGTCTCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCT 2086
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2087 GCTCTAGTCTCATCTCATATCTTTAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGT 2160
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2161 AAATATATATATATTATTTTCTTTTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATAT 2234
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2235 ATCATGTTTCAGTAAATGCAGTGAAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTAC 2308
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2309 CTTTATATTCTCCAACACAAGACCGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATT 2382
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2383 TTCTTTATTTTTTTGAGATGGAGTCTTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACT 2456
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2457 GCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTGC 2530
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2531 CACCATTCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT 2604
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2605 CCTGACCTTGTGATCTGCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTG 2678
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2679 TTTTTTTAAGATAGAAAAATATACTTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGAT 2752
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2753 AACACATAATAAACATTGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGA 2826
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2827 ATCTTTAGAAGCTGTCAACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATAT 2900
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2901 TTTATAGTAGGGCACTAAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGT 2974
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2975 CCCTCTGCTGTACATCCCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTG 3048
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 3049 TTCTGTAAAAAGCTTTTCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGAT 3122
Query 1813 ------------------------------------------------------ 1812
Sbjct 3123 TTCTTAATATTGAACCAACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA 3176
