Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10619
Subject:
XR_001744731.2
Aligned Length:
3346
Identities:
237
Gaps:
3109

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGCAAATCGCAGTCTTCTCCAGGCTGACAAGGCGAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGGCATGGCTTCGAAGTGCAAAAGAGTCATCATGAAACATCATGAATCATGAATCATTAGGCGTCTTCCCTTCG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTCCCCACTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGCGAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTGGGATTA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGGTCCCCGCCACCACACCTGGCTAATTTTCTTATTTATTTATTTATTTTTAGTAGAGATGGGGTTTTGCCAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGGCGTAAGCCATTGCACCCAACTCACTCCCCACCTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAGACATCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGCCCTCCCTGCCCCTTCTCCCTCCCCTTTCAGAGAATCTCCAGGAATTTCTGCCATTGTGCAGGGAGCAATTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AAAAATCAGTTAGTTCAGCTGGGTGCAGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GATCACCTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAGCACAGTGAAACCCCGTCTCTACTAAAAATACAAAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AATTAGCCGGGCGTGGTGATGGGCACCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAAC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CTGGGAGGTGGAGCTTGCAGTGAGCCGAGACTGCAGCATTGCACTCCAGCCTGCGCAACAAGAGTGAAACTGTC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCAAAAAACAAAACAAAACAAAACACAAAAAGAAAGAAAAAAGGAAAAATCAGTTAGTTCGATTATTAGAAGAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TAGATTATTGCTCAGCAGTAACCACTCCTTTCCCACAAACTCCCCTCTCTAGGAGGAATGTACCTCCCCACCCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTCCTGTTAGGCTTGGCCAGGTGAATCGCTTTGGCCAATAGAATGTAACTGACAAGGTGAGCAGAGATTTGCAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGGGCTTGTGCTTGGTGCTGGTCCTCCGGGGCTCCTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCCCCTCCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TAGCCCTCTGGCCCTGGGGAGAATGAGAGGCATGTGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGCAAGCCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGAAGCTTGAGCGAGAGATAAATGCTTGGTCTTTTTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGGCTGGAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TGCAGTGTGGCACAATCTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CAAGTAGCTGGGACTACAGCCAAATTGGAAGACCCACTTCTCTGGACTGGATGCTGCATTGAATTGAGCAAAGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AACTGAGTGCCCGGGGAGCTCAAAGGGAAGCAGCCCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGGACCTGT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTCCAGCTGCTTGTGCCCCCCACTTCATGGAGGAGGGACCAGGGATCCTCAGAGGAGAGGAATCGGCTCCCAGA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CACCTGCCACTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATGACATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCCTTC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTACAGGG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCCCCACG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCATGTCC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGTGGG  2886

Query    1  -----------------ATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGGCAC  57
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  GTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGGCAC  2960

Query   58  TCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGGTGA  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  TCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGGTGA  3034

Query  132  GTTGCCAGGTGTGGCCCGTAATCGGAGCGCACAAAACATGATGGGACACGTAACGGGACCACACAGGGCACATT  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  GTTGCCAGGTGTGGCCCGTAATCGGAGCGCACAAAACATGATGGGACACGTAACGGGACCACACAGGGCACATT  3108

Query  206  GGGCACTTGCAGGGGCGCGAGGTGGCGGCACG------------------------------------------  237
            ||||||||||||||||||||||||||||||||                                          
Sbjct 3109  GGGCACTTGCAGGGGCGCGAGGTGGCGGCACGTAATGGGAGCGCGCTGAGCATGATGGGGCATGTGCGGGAGCG  3182

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 3183  CCAGGCGGGGCATGTAACCAGAGCGTGCGGGGCATGATGGGGCACGGACATGGGGGGTTAGGTGGGGCACGTAA  3256

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 3257  TTGGAGCTCGCGGGGCAGGATGGGGCATCTAACTGGAGCGACAGAGAGCACGATGGGGCACTTACAGGGGCCGG  3330

Query  238  ----------------  237
                            
Sbjct 3331  AGGCTGGGTACGTAAT  3346

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