Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10619
Subject:
XR_002956439.1
Aligned Length:
3215
Identities:
237
Gaps:
2978

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGAATCGGCTCCCAGACACCTGCCACTCGTGAATGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGATGGGGTTTCACTATGTTGCCCCGGCTGGTCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAAATTCCTGGCCTCAAGCGATCCTCCTGCCTCCGCCTTCCGAAGTGCTGGGATTATAGGCTTGAGTCACCACC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTGCCCAGCATACATCTGCTTTCTGAATATTTGAGAGGCGGAAGGCACAAGGCGTGACAATTGATGGGATTTGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GATGTAAAGAGCAAGAGAGGACTCAAGCACAGTCGCCTCGAGGTTTCTAGCCCCGGCTGCTGTCACCAACCACT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTCAGGAAGAGTGCGATGACATGGATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCCACTAGGTCTCCAGCTCCTTCTCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTGACTTAACCGCTCGTACAGGGACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCAC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCCTCAGCGTCTACGCCCCCACGTCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTAACGCGCTTCCCCCCATGTCCTAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCC  1554

Query    1  ----------------------------------------ATGCCCGGCAGACCCCTACCGACGGCGGCATTCC  34
                                                    ||||||||||||||||||||||||||||||||||
Sbjct 1555  TTCCTGGCTGTGACTCTGGTGGGGTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCC  1628

Query   35  ATTCTGGGGCCACGAGGAGGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTG  108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  ATTCTGGGGCCACGAGGAGGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTG  1702

Query  109  GAACTACAGAGGTCGCACGGTGAGTTGCCAGGTGTGGCCCGTAATCGGAGCGCACAAAACATGATGGGACACGT  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GAACTACAGAGGTCGCACGGTGAGTTGCCAGGTGTGGCCCGTAATCGGAGCGCACAAAACATGATGGGACACGT  1776

Query  183  AACGGGACCACACAGGGCACATTGGGCACTTGCAGGGGCGCGAGGTGGCGGCACG-------------------  237
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct 1777  AACGGGACCACACAGGGCACATTGGGCACTTGCAGGGGCGCGAGGTGGCGGCACGTAATGGGAGCGCGCTGAGC  1850

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 1851  ATGATGGGGCATGTGCGGGAGCGCCAGGCGGGGCATGTAACCAGAGCGTGCGGGGCATGATGGGGCACGGACAT  1924

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 1925  GGGGGGTTAGGTGGGGCACGTAATTGGAGCTCGCGGGGCAGGATGGGGCATCTAACTGGAGCGACAGAGAGCAC  1998

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 1999  GATGGGGCACTTACAGGGGCCGGAGGCTGGGTACGTAATGAGAGCGAGCGGGAAATGATGGGGCACCTAACGAG  2072

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2073  CACGCAGAGCATGATGGGGCACGGGTGCGAGGTGGGGCGCACAGTGGGAGCGCGTGGGGCATGATGGGACACAT  2146

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2147  GGCGAGGCCGTCAGGGCACAGGGGAAGCACTTTTGGAACACGTGAGTGACAGGGCTGCCGCCCTTGAAGGAGCC  2220

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2221  CTCGGAGTGGCTGCGTGGTGGGGCACGTGGGGCAGGTTCAGGAAAAAGGATGCAGCATGTGATTGCAGGGCAAC  2294

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2295  CTGGTGAGGACACGAGAGCCACCTGCCACCAGCAGGGTTCAGGGCTCCCAGCTGTGGGTTACTTCCACCTTCTT  2368

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2369  TCACTTTCCCTCTTCCATTGTATTCTAGAGAATTTAGGCCCAGACAAGACACTGATTGATTGATTGATTGATCG  2442

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2443  ATTGACAGAGGCTCGCTCTGAGCCCAGGCTGGAGTTCAGTGATGGATCTCAGCTCACTGCAGCCGCCACCTCCT  2516

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2517  GGGCTCAAGAGATCCTCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGACGTGCACCACCAGGCCCAGCTAA  2590

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2591  TTTATTTTTTAGTTTTTAATTTGCTGGTAAGATGGTTTGTAGCTTTGTTGCCTAGGCTGGTCTTGAACTCCTGG  2664

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2665  CTTCAAGCGATCCTCCAGTCTTGACCTCCCAAAGTGCTGGGATTATAGGCGTAGGCTACAGCCAACTTTCAATA  2738

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2739  CTGCCCCATTGGGGGTTACGTTTCCAACACATGAAATTAGGAGGATACATTCAAACCACAGCAGTATATTATGA  2812

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2813  CCATAATATTCATTAACTGTGTAACAGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACC  2886

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2887  AGAGTGGGTAGATCACTCGAGGTCAGGAGTTTGAGACCAGCCTGGCCCACATGATGAAACCGCCTCTCTACTAA  2960

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 2961  AAATACAAAAAATTAGCCGGTGTGGTGGCAGGCGCCTGTAACCTCAGCTACTTGGGAGGCTGAGGCAGGAGAAT  3034

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 3035  CACTTGAATCCGGGAGGTGGAGGTGGCAGTGAGCCTGATTGCACCACTGCACTCCAGCCTGGGCAACAAGAGCA  3108

Query  238  --------------------------------------------------------------------------  237
                                                                                      
Sbjct 3109  AAACTCTGTCTCAATAAACAAACAAACAAACAAAACCTGTATAACAGAGTGTCATTGAATTTCTAAACGTTGAA  3182

Query  238  ---------------------------------  237
                                             
Sbjct 3183  AGACTTCACATTAAAAAAAAACTCACAATTTAA  3215

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