Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_033678.1
Aligned Length:
5209
Identities:
220
Gaps:
4961

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAAGGAGGGCTGTCTGAGATTCGAGGGAAACAAGCTCTCAGGACTTCCGGTCGCCATGATGGCTGTGGGCGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAACGCGGTTAGTGCAAGCATCTGGGCCATCTTCAATGGTAAAAAAGATACAGTAAAGACATAAATACCACATT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGACAAATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACGGGTATACAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAGCTACCCTGTGTTTCTGAGACCCTTTGTGACATCTCACATTTTTTCCAAGAAGATGATGAGACAGAGGCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGGAGACATTTGCTCAGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGAGAATCAAATAGTTTCCTCTTATGCTTCTAAAGTCTGTTTTGAGATCGAAGAAGATTATAAAAATCGTCAGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTCTGGGGCCTGAAGGAAATGTGGATGTTGAGTTGATTGATAAGAGCACAAACAGATACAGCGTTTGGTTCCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTGCTGGCTGGTATCTGTGGTCAGCCACAGGCCTCGGCTTCCTGGTAAGGGATGAGGTCACAGTGACGATTGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTTTGGTTCCTGGAGTCAGCACCTGGCCCTGGACCTGCAGCACCATGAACAGTGGCTGGTGGGCGGCCCCTTGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTGATGTCACTGCAGAGCCAGAGGAGGCTGTCGCCGAAATCCACCTCCCCCACTTCATCTCCCTCCAAGGTGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTGGACGTCTCCTGGTTTCTCGTTGCCCATTTTAAGAATGAAGGGATGGTCCTGGAGCATCCAGCCCGGGTGGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCTTTCTATGCTGTCCTGGAAAGCCCCAGCTTCTCTCTGATGGGCATCCTGCTGCGGATCGCCAGTGGGACTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCCTCTCCATCCCCATCACTTCCAACACATTGATCTATTATCACCCCCACCCCGAAGATATTAAGTTCCACTTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TACCTTGTCCCCAGCGACGCCTTGCTAACAAAGGCGATAGATGATGAGGAAGATCGCTTCCATGGTGTGCGCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCAGACTTCGCCCCCAATGGAACCCCTGAACTTTGGTTCCAGTTATATTGTGTCTAATTCTGCTAACCTGAAAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TAATGCCCAAGGAGTTGAAATTGTCCTACAGGAGCCCTGGAGAAATTCAGCACTTCTCAAAATTCTATGCTGGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CAGATGAAGGAACCCATTCAACTTGAGATTACTGAAAAAAGACATGGGACTTTGGTGTGGGATACTGAGGTGAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCCAGTGGATCTCCAGCTTGTAGCTGCATCAGCCCCTCCTCCTTTCTCAGGTGCAGCCTTTGTGAAGGAGAACC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ACCGGCAACTCCAAGCCAGGATGGGGGACCTGAAAGGGGTGCTCGATGATCTCCAAGACAATGAGGTTCTTACT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGAATGAGAAGGAGCTGGTGGAGCAGGAAAAGACACGGCAGAGCAAGAATGAGGCCTTGCTGAGCATGGTGGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAAGAAAGGGGACCTGGCCCTGGACGTGCTCTTCAGAAGCATTAGTGAAAGGGACCCTTACCTCGTGTCCTATC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TTAGACAGCAGAATTTGTAAAATGAGTCAGTTAGGTAGTCTGGAAGAGAGAATCCAGCGTTCTCATTGGAAATG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GATAAACAGAAATGTGATCATTGATTTCAGTGTTCAAGACAGAAGAAGACTGGGTAACATCTATCACACAGGCT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTCAGGACAGACTTGTAACCTGGCATGTACCTATTGACTGTATCCTCATGCATTTTCCTCAAGAATGTCTGAAG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAGGTAGTAATATTCCTTTTAAATTTTTTCCAACCATTGCTTGATATATCACTATTTTATCCATTGACATGATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTTGAAGACCCAGGATAAAGGACATCCGGATAGGTGTGTTTATGAAGGATGGGGCCTGGAAAGGCAACTTTTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGATTAATGTGAAAAATAATTCCTATGGACACTCCGTTTGAAGTATCACCTTCTCATAACTAAAAGCAGAAAAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CTAACAAAAGCTTCTCAGCTGAGGACACTCAAGGCATACATGATGACAGTCTTTTTTTTTTTTGTATGTTAGGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTTTAACACTTTATCTATGGCTACTGTTATTAGAACAATGTAAATGTATTTGCTGAAAGAGAGCACAAAAATGG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAGAAAATGCAAACATGAGCAGAAAATATTTTCCCACTGGTGTGTAGCCTGCTACAAGGAGTTGTTGGGTTAAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGTTCATGGTCAACTCCAAGGAATACTGAGATGAAATGTGGTAAATCAACTCCACAGAACCACCAAAAAGAAAA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TGAGGGTAATTCAGCTTATTCTGAGACAGACATTCCTGGCAATGTACCATACAAAAAATAAGCCAACTCTGACA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTTGGATTCTACCATAGACTCTGTCATTTTGTAGCCATTTCAGCTGTCTTTTGATTAATGTTTTCGTGGCACAC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ATATTTCCATCCTTTTATGTTTAATCTGTTTAAAACAAGTTCCTAGTAGACACCATCTGGTTGAGTCAGTTTTT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTTATGGTGTATTTTGAACCCATTCTGATAGTCTCTTTTAACTGGAAGATTTCAATTACTTACGTTAATGTAAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TATTAATATGTTAGGATTTATCCTCAGTCAGCCAGTTTGTTATGTCTTTTCTATTCTACTGTTATCACATTTGT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ACCACTTAAAGTGGAATCTAGGCACTTTATCACCATTTAGATCCTATTACCTTTTCTCATCTAGGATATAGTTA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TCTTCTACATAATCTTTCTGTATCTTAAAACCCATCAATAAATTATTATATATTTTCTACTTTTAATCACTCAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAGATTTAAAAAACTCATGAGAAGAGTAATCTGTTATGTTTTTCCAGATATTTACCATTTCTGTTGCTCTTCCT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCATTATTTTCCAAATTTCGTTCTGCAAATTTCCACTTCCTCTGATAGACGTTTTTTAGTTCTTTTAGAGTGGT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TCTGATAGGTACAGATTCTCTTATTTTTTGCTTCCTCTGAGGACATCTTTTTCTCACCTTCATTCTCAGTGATG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTTTTTGCTTGTAGTATTTTTAGTTGACATTGTTTTCTGTTCAGCAGTTTCCTTTTAGCTTCCGTATTTCCTGA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TGAGAAATCTGCAGTCATTCAAATTGTTGTTTCCCTGTATGTAGTGTGTCATTTTTCTGTCAGATTTCAAGGTA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TTTATCTTTAGTTTTTAGCCATTTCATTATGTTGGGGATGAGTTTCCTTGTTTTATTCCCTTTGGAATTTGCTC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CAATTCATAAATTTGCAGTTTTATGTCTTTTACCAAACTTAGAGGTTTTCAGCCTAATTTCTAAAAATACTTTT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TATTAGCCTGATTTTCATCTTTATAGGAAATAGTTTAAGTGATGACAAGTTCCAATAGCTTATATGCCCAGAAG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GCCTTCAAAATAAGAATTTTGAAAGAATACAGAAAACAAACTTTTATATCCTTCTCATGTCTTCTACTGTAAAA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TTCATATGCTTTGCTACTCTAAACCTAGTTTGAAATCAACAGTCTTGAGAATAGATGAAAATTTTGATGAATAG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  TGGAATTCTTTTAAATGGAAACCTCTTACATGTGATTTTCCTTGCCATCTAGAAATAAACCATAGTATTTATGT  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TGAATCAATCAATATTATATTTTGTTTTTTTCCTCCTCTTCTGAGACTCTTATTGTGGAAATGTTAGACTTTTA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGTTTTCCTAAATGTCCCTGATATTCTACTTATTTAGAACATCTTTTCATTTTTTCCATTATTCTGATTGGGTA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  ATTTTAATTTGTCTATTTTCAAATTTGCTGGAGTGTTCACCTGTTGTTATCTGTGTCGTCCCACTGAGTGCATT  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  CACCACCTTTTAAATTTTGGTCACTGTATGTATCAGTTCTAAAATTTCCATTTTGTTCTCTATATTTTAAATTT  3922

Query    1  --------------------------------------------------------------------ATGGAG  6
                                                                                |..|.|
Sbjct 3923  CTTGCCTTATATTCTATTTTCCTGCAAATGTGTCAGCATTTGCTTGTTTGAGCTTTTTTTTTTTCAAGACAGGG  3996

Query    7  TCTC-GCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCA  79
            |||| .|||||||.||||||||||||||||||||...||||||.|||||||||||||||||||| ||.||||||
Sbjct 3997  TCTCAACTCTGTTACCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGCCT-CCTGGTTCA  4069

Query   80  AGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCAC-GCCCGGCTAA--TTTT  150
            |||||||.||.||||||||||||||||||||||||||.||.||.||||||||||||| ||||.|||||  ||||
Sbjct 4070  AGCGATTATTGTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATGCACCACCACAGCCCAGCTAATTTTTT  4143

Query  151  GTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA-C  223
            ||||||||.||.|||||.|.|||||||.|||||.|.|||||||||.|||||||||||.|||||||||||||| |
Sbjct 4144  GTATTTTTAGTAGAGACAGAGTTTTGCTATGTTGGCCAGGCTGGTTTTGAACTCCTGGCCTCAAGTGATCCACC  4217

Query  224  CACCTCGGCCTCCCAAAGTGTTGAGA------------------------------------------------  249
            ||||||.|||||||||||||.||.||                                                
Sbjct 4218  CACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCACTACACCTGGCACATTTGAGTATTTTTTTTTTTTTTTT  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  TTTTTTTTTGAGATGGAGTCTCGCTCTGTCATCTAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAGCC  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  TCTGTCTCCCGGGCTCAAGCGATTCTCTTGCCTCAGCCTCCTGAGTAGCTAGGACTACAGGTGCATGCCAACAC  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  GCCCGGCTAATTTTTTTTTAAAAATATTTTTAGTAGAGACAGGGTTTCACCATTTTGGCCAGGATGGTCTTGAT  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  CTCCTGACCTCATGATCCACCCGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGC  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  CTCATTTGAGTATTTTTATAATGTCTCTTTTAAAGTCTTTGTCAGATAATTTCACTGTACATGTTATTCAGTGT  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  TTGGTGTCCACTGAGTTGTCATTTGCCAGACAAGTGGAGATTTTTGCAGCTCATCCTTGTATTCTCAGTAGTTC  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  CGATATGTACCCTCGAAATGTGAATGTTATCTTATGAGACTCTGTTTTATTTGTATCCAACAGAAGATGTTTAT  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  TATTTATTTGGCTTTCTGTGAACTGAGGTCTTAATATCAGCTCATTTTAAAAGTCTTTGCAGTGGTATTCGGAT  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  CTATCCTGTGTGTGCCTATGAGATTGGGTGCAGTGTATCCTGTTAGCTCCATTCTCAGGGCGTTTGAATGTGAA  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  TTAGGACCAGCGCAATGAATGCTCAAGTTGGGGTTGGGCGTTAGAATTCATAAAAGTCTTTATATGCTCAGATT  5031

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5032  CTGCAGCTCCATCCTCTTCATGATTGTGATCGTAAGGACAGTGGAATTTTGCAGTTGTCTATACCTTATCTTGA  5105

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5106  AGTAGAACTAAATTGTTACATTTGAAGAATGTACTTCATAAATTTACAAAAATAAAAAAATAGGTTAATGTTAT  5179

Query  250  -----------------------------  249
                                         
Sbjct 5180  TAAAACAAAAAGGCACACAAAAAAAAAAA  5208

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