Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_033679.1
Aligned Length:
5251
Identities:
220
Gaps:
5003

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTAAAAAAGATACAGTAAAGACATAAATACCACATTTGACAAATGGAAAAAAAGGAGTGTCCAGAAAAGAGTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAGCAGTGAGGAAGAGCTGCCGAGACGGGACAGTGGATCCAGTAGGAACATAGATGCATCCAAACTCATTAGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTACAAGGATCACGGAAACTGTTGGTTGACAATAGCATACGGGAACTGCAATACACAAAAACTGGAATTTTTTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCAGGCTGAGGCCTGTGTGACAAATGATACGGTATACAGGGAGCTACCCTGTGTTTCTGAGACCCTTTGTGACA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTCACATTTTTTCCAAGAAGATGATGAGACAGAGGCAGAGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTATCTGGGGGGGACATTCCCAGGAGACATTTGCTCAGAAGAGAATCAAATAGTTTCCTCTTATGCTTCTAAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCTGTTTTGAGATCGAAGAAGATTATAAAAATCGTCAGTTTCTGGGGCCTGAAGGAAATGTGGATGTTGAGTTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATTGATAAGAGCACAAACAGATACAGCGTTTGGTTCCCCACTGCTGGCTGGTATCTGTGGTCAGCCACAGGCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CGGCTTCCTGGTAAGGGATGAGGTCACAGTGACGATTGCGTTTGGTTCCTGGAGTCAGCACCTGGCCCTGGACC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCAGCACCATGAACAGTGGCTGGTGGGCGGCCCCTTGTTTGATGTCACTGCAGAGCCAGAGGAGGCTGTCGCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAAATCCACCTCCCCCACTTCATCTCCCTCCAAGCAGGTGAGGTGGACGTCTCCTGGTTTCTCGTTGCCCATTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAAGAATGAAGGGATGGTCCTGGAGCATCCAGCCCGGGTGGAGCCTTTCTATGCTGTCCTGGAAAGCCCCAGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTCTCTGATGGGCATCCTGCTGCGGATCGCCAGTGGGACTCGCCTCTCCATCCCCATCACTTCCAACACATTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ATCTATTATCACCCCCACCCCGAAGATATTAAGTTCCACTTGTACCTTGTCCCCAGCGACGCCTTGCTAACAAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGCGATAGATGATGAGGAAGATCGCTTCCATGGTGTGCGCCTGCAGACTTCGCCCCCAATGGAACCCCTGAACT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTGGTTCCAGTTATATTGTGTCTAATTCTGCTAACCTGAAAGTAATGCCCAAGGAGTTGAAATTGTCCTACAGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGCCCTGGAGAAATTCAGCACTTCTCAAAATTCTATGCTGGGCAGATGAAGGAACCCATTCAACTTGAGATTAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGAAAAAAGACATGGGACTTTGGTGTGGGATACTGAGGTGAAGCCAGTGGATCTCCAGCTTGTAGCTGCATCAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCCCTCCTCCTTTCTCAGGTGCAGCCTTTGTGAAGGAGAACCACCGGCAACTCCAAGCCAGGATGGGGGACCTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AAAGGGGTGCTCGATGATCTCCAAGACAATGAGGTTCTTACTGAGAATGAGAAGGAGCTGGTGGAGCAGGAAAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GACACGGCAGAGCAAGAATGAGGCCTTGCTGAGCATGGTGGAGAAGAAAGGGGACCTGGCCCTGGACGTGCTCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCAGAAGCATTAGTGAAAGGGACCCTTACCTCGTGTCCTATCTTAGACAGCAGAATTTGTAAAATGAGTCAGTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGGTAGTCTGGAAGAGAGAATCCAGCGTTCTCATTGGAAATGGATAAACAGAAATGTGATCATTGATTTCAGTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTCAAGACAGAAGAAGACTGGGTAACATCTATCACACAGGCTTTCAGGACAGACTTGTAACCTGGCATGTACCT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ATTGACTGTATCCTCATGCATTTTCCTCAAGAATGTCTGAAGAAGGTAGTAATATTCCTTTTAAATTTTTTCCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ACCATTGCTTGATATATCACTATTTTATCCATTGACATGATTCTTGAAGACCCAGGATAAAGGACATCCGGATA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GGTGTGTTTATGAAGGATGGGGCCTGGAAAGGCAACTTTTCCTGATTAATGTGAAAAATAATTCCTATGGACAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCCGTTTGAAGTATCACCTTCTCATAACTAAAAGCAGAAAAGCTAACAAAAGCTTCTCAGCTGAGGACACTCAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGCATACATGATGACAGTCTTTTTTTTTTTTGTATGTTAGGACTTTAACACTTTATCTATGGCTACTGTTATTA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAACAATGTAAATGTATTTGCTGAAAGAGAGCACAAAAATGGGAGAAAATGCAAACATGAGCAGAAAATATTTT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCCACTGGTGTGTAGCCTGCTACAAGGAGTTGTTGGGTTAAATGTTCATGGTCAACTCCAAGGAATACTGAGAT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GAAATGTGGTAAATCAACTCCACAGAACCACCAAAAAGAAAATGAGGGTAATTCAGCTTATTCTGAGACAGACA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTCCTGGCAATGTACCATACAAAAAATAAGCCAACTCTGACATTTGGATTCTACCATAGACTCTGTCATTTTGT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGCCATTTCAGCTGTCTTTTGATTAATGTTTTCGTGGCACACATATTTCCATCCTTTTATGTTTAATCTGTTTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAACAAGTTCCTAGTAGACACCATCTGGTTGAGTCAGTTTTTTTTATGGTGTATTTTGAACCCATTCTGATAGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CTCTTTTAACTGGAAGATTTCAATTACTTACGTTAATGTAATTATTAATATGTTAGGATTTATCCTCAGTCAGC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CAGTTTGTTATGTCTTTTCTATTCTACTGTTATCACATTTGTACCACTTAAAGTGGAATCTAGGCACTTTATCA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CCATTTAGATCCTATTACCTTTTCTCATCTAGGATATAGTTATCTTCTACATAATCTTTCTGTATCTTAAAACC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CATCAATAAATTATTATATATTTTCTACTTTTAATCACTCAGAAGATTTAAAAAACTCATGAGAAGAGTAATCT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTTATGTTTTTCCAGATATTTACCATTTCTGTTGCTCTTCCTTCATTATTTTCCAAATTTCGTTCTGCAAATTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CCACTTCCTCTGATAGACGTTTTTTAGTTCTTTTAGAGTGGTTCTGATAGGTACAGATTCTCTTATTTTTTGCT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCCTCTGAGGACATCTTTTTCTCACCTTCATTCTCAGTGATGTTTTTTGCTTGTAGTATTTTTAGTTGACATTG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TTTTCTGTTCAGCAGTTTCCTTTTAGCTTCCGTATTTCCTGATGAGAAATCTGCAGTCATTCAAATTGTTGTTT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CCCTGTATGTAGTGTGTCATTTTTCTGTCAGATTTCAAGGTATTTATCTTTAGTTTTTAGCCATTTCATTATGT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGGGGATGAGTTTCCTTGTTTTATTCCCTTTGGAATTTGCTCCAATTCATAAATTTGCAGTTTTATGTCTTTTA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CCAAACTTAGAGGTTTTCAGCCTAATTTCTAAAAATACTTTTTATTAGCCTGATTTTCATCTTTATAGGAAATA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GTTTAAGTGATGACAAGTTCCAATAGCTTATATGCCCAGAAGGCCTTCAAAATAAGAATTTTGAAAGAATACAG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  AAAACAAACTTTTATATCCTTCTCATGTCTTCTACTGTAAAATTCATATGCTTTGCTACTCTAAACCTAGTTTG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  AAATCAACAGTCTTGAGAATAGATGAAAATTTTGATGAATAGTGGAATTCTTTTAAATGGAAACCTCTTACATG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TGATTTTCCTTGCCATCTAGAAATAAACCATAGTATTTATGTTGAATCAATCAATATTATATTTTGTTTTTTTC  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  CTCCTCTTCTGAGACTCTTATTGTGGAAATGTTAGACTTTTATGTTTTCCTAAATGTCCCTGATATTCTACTTA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TTTAGAACATCTTTTCATTTTTTCCATTATTCTGATTGGGTAATTTTAATTTGTCTATTTTCAAATTTGCTGGA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  GTGTTCACCTGTTGTTATCTGTGTCGTCCCACTGAGTGCATTCACCACCTTTTAAATTTTGGTCACTGTATGTA  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TCAGTTCTAAAATTTCCATTTTGTTCTCTATATTTTAAATTTCTTGCCTTATATTCTATTTTCCTGCAAATGTG  3996

Query    1  ------------------------------------ATGGAGTCTC-GCTCTGTTGCCCAGGCTGGAGTGCAGT  37
                                                |..|.||||| .|||||||.||||||||||||||||||
Sbjct 3997  TCAGCATTTGCTTGTTTGAGCTTTTTTTTTTTCAAGACAGGGTCTCAACTCTGTTACCCAGGCTGGAGTGCAGT  4070

Query   38  GGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGC  111
            ||...||||||.|||||||||||||||||||| ||.|||||||||||||.||.|||||||||||||||||||||
Sbjct 4071  GGTGCGATCTCAGCTCACTGCAACCTCTGCCT-CCTGGTTCAAGCGATTATTGTGCCTCAGCCTCCAGAGTAGC  4143

Query  112  TGGGACTATAGACATGCACCACCAC-GCCCGGCTAA--TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGT  182
            |||||.||.||.||||||||||||| ||||.|||||  ||||||||||||.||.|||||.|.|||||||.||||
Sbjct 4144  TGGGATTACAGGCATGCACCACCACAGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGAGTTTTGCTATGT  4217

Query  183  TAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA------  249
            |.|.|||||||||.|||||||||||.|||||||||||||| |||||||.|||||||||||||.||.||      
Sbjct 4218  TGGCCAGGCTGGTTTTGAACTCCTGGCCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAG  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  GCCACTACACCTGGCACATTTGAGTATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCAT  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  CTAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAGCCTCTGTCTCCCGGGCTCAAGCGATTCTCTTGCC  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  TCAGCCTCCTGAGTAGCTAGGACTACAGGTGCATGCCAACACGCCCGGCTAATTTTTTTTTAAAAATATTTTTA  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  GTAGAGACAGGGTTTCACCATTTTGGCCAGGATGGTCTTGATCTCCTGACCTCATGATCCACCCGCCTCGGCCT  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  TCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTCATTTGAGTATTTTTATAATGTCTCTTTTA  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  AAGTCTTTGTCAGATAATTTCACTGTACATGTTATTCAGTGTTTGGTGTCCACTGAGTTGTCATTTGCCAGACA  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  AGTGGAGATTTTTGCAGCTCATCCTTGTATTCTCAGTAGTTCCGATATGTACCCTCGAAATGTGAATGTTATCT  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  TATGAGACTCTGTTTTATTTGTATCCAACAGAAGATGTTTATTATTTATTTGGCTTTCTGTGAACTGAGGTCTT  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  AATATCAGCTCATTTTAAAAGTCTTTGCAGTGGTATTCGGATCTATCCTGTGTGTGCCTATGAGATTGGGTGCA  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  GTGTATCCTGTTAGCTCCATTCTCAGGGCGTTTGAATGTGAATTAGGACCAGCGCAATGAATGCTCAAGTTGGG  5031

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5032  GTTGGGCGTTAGAATTCATAAAAGTCTTTATATGCTCAGATTCTGCAGCTCCATCCTCTTCATGATTGTGATCG  5105

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5106  TAAGGACAGTGGAATTTTGCAGTTGTCTATACCTTATCTTGAAGTAGAACTAAATTGTTACATTTGAAGAATGT  5179

Query  250  -----------------------------------------------------------------------  249
                                                                                   
Sbjct 5180  ACTTCATAAATTTACAAAAATAAAAAAATAGGTTAATGTTATTAAAACAAAAAGGCACACAAAAAAAAAAA  5250

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