Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_033680.1
Aligned Length:
5067
Identities:
220
Gaps:
4819

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAAGGAGGGCTGTCTGAGATTCGAGGGAAACAAGCTCTCAGGACTTCCGGTCGCCATGATGGCTGTGGGCGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAACGCGGTTAGTGCAAGCATCTGGGCCATCTTCAATGGTAAAAAAGATACAGTAAAGACATAAATACCACATT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGACAAATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACGGGTATACAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAGCTACCCTGTGTTTCTGAGACCCTTTGTGACATCTCACATTTTTTCCAAGAAGATGATGAGACAGAGGCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGGAGACATTTGCTCAGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGAGAATCAAATAGTTTCCTCTTATGCTTCTAAAGTCTGTTTTGAGATCGAAGAAGATTATAAAAATCGTCAGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTCTGGGGCCTGAAGGAAATGTGGATGTTGAGTTGATTGATAAGAGCACAAACAGATACAGCGTTTGGTTCCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTGCTGGCTGGTATCTGTGGTCAGCCACAGGCCTCGGCTTCCTGGTAAGGGATGAGGTCACAGTGACGATTGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTTTGGTTCCTGGAGTCAGCACCTGGCCCTGGACCTGCAGCACCATGAACAGTGGCTGGTGGGCGGCCCCTTGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTGATGTCACTGCAGAGCCAGAGGAGGCTGTCGCCGAAATCCACCTCCCCCACTTCATCTCCCTCCAAGGTGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTGGACGTCTCCTGGTTTCTCGTTGCCCATTTTAAGAATGAAGGGATGGTCCTGGAGCATCCAGCCCGGGTGGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCTTTCTATGCTGTCCTGGAAAGCCCCAGCTTCTCTCTGATGGGCATCCTGCTGCGGATCGCCAGTGGGACTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCCTCTCCATCCCCATCACTTCCAACACATTGATCTATTATCACCCCCACCCCGAAGATATTAAGTTCCACTTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TACCTTGTCCCCAGCGACGCCTTGCTAACAAAGGCGATAGATGATGAGGAAGATCGCTTCCATGGTGTGCGCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCAGACTTCGCCCCCAATGGAACCCCTGAACTTTGGTTCCAGTTATATTGTGTCTAATTCTGCTAACCTGAAAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TAATGCCCAAGTGGATCTCCAGCTTGTAGCTGCATCAGCCCCTCCTCCTTTCTCAGGTGCAGCCTTTGTGAAGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGAACCACCGGCAACTCCAAGCCAGGATGGGGGACCTGAAAGGGGTGCTCGATGATCTCCAAGACAATGAGGTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTTACTGAGAATGAGAAGGAGCTGGTGGAGCAGGAAAAGACACGGCAGAGCAAGAATGAGGCCTTGCTGAGCAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGTGGAGAAGAAAGGGGACCTGGCCCTGGACGTGCTCTTCAGAAGCATTAGTGAAAGGGACCCTTACCTCGTGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCTATCTTAGACAGCAGAATTTGTAAAATGAGTCAGTTAGGTAGTCTGGAAGAGAGAATCCAGCGTTCTCATTG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAAATGGATAAACAGAAATGTGATCATTGATTTCAGTGTTCAAGACAGAAGAAGACTGGGTAACATCTATCACA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CAGGCTTTCAGGACAGACTTGTAACCTGGCATGTACCTATTGACTGTATCCTCATGCATTTTCCTCAAGAATGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CTGAAGAAGGTAGTAATATTCCTTTTAAATTTTTTCCAACCATTGCTTGATATATCACTATTTTATCCATTGAC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATGATTCTTGAAGACCCAGGATAAAGGACATCCGGATAGGTGTGTTTATGAAGGATGGGGCCTGGAAAGGCAAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTTTCCTGATTAATGTGAAAAATAATTCCTATGGACACTCCGTTTGAAGTATCACCTTCTCATAACTAAAAGCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAAAAGCTAACAAAAGCTTCTCAGCTGAGGACACTCAAGGCATACATGATGACAGTCTTTTTTTTTTTTGTATG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTAGGACTTTAACACTTTATCTATGGCTACTGTTATTAGAACAATGTAAATGTATTTGCTGAAAGAGAGCACAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAATGGGAGAAAATGCAAACATGAGCAGAAAATATTTTCCCACTGGTGTGTAGCCTGCTACAAGGAGTTGTTGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTTAAATGTTCATGGTCAACTCCAAGGAATACTGAGATGAAATGTGGTAAATCAACTCCACAGAACCACCAAAA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGAAAATGAGGGTAATTCAGCTTATTCTGAGACAGACATTCCTGGCAATGTACCATACAAAAAATAAGCCAACT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTGACATTTGGATTCTACCATAGACTCTGTCATTTTGTAGCCATTTCAGCTGTCTTTTGATTAATGTTTTCGTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GCACACATATTTCCATCCTTTTATGTTTAATCTGTTTAAAACAAGTTCCTAGTAGACACCATCTGGTTGAGTCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GTTTTTTTTATGGTGTATTTTGAACCCATTCTGATAGTCTCTTTTAACTGGAAGATTTCAATTACTTACGTTAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGTAATTATTAATATGTTAGGATTTATCCTCAGTCAGCCAGTTTGTTATGTCTTTTCTATTCTACTGTTATCAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ATTTGTACCACTTAAAGTGGAATCTAGGCACTTTATCACCATTTAGATCCTATTACCTTTTCTCATCTAGGATA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TAGTTATCTTCTACATAATCTTTCTGTATCTTAAAACCCATCAATAAATTATTATATATTTTCTACTTTTAATC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ACTCAGAAGATTTAAAAAACTCATGAGAAGAGTAATCTGTTATGTTTTTCCAGATATTTACCATTTCTGTTGCT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTTCCTTCATTATTTTCCAAATTTCGTTCTGCAAATTTCCACTTCCTCTGATAGACGTTTTTTAGTTCTTTTAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AGTGGTTCTGATAGGTACAGATTCTCTTATTTTTTGCTTCCTCTGAGGACATCTTTTTCTCACCTTCATTCTCA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTGATGTTTTTTGCTTGTAGTATTTTTAGTTGACATTGTTTTCTGTTCAGCAGTTTCCTTTTAGCTTCCGTATT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TCCTGATGAGAAATCTGCAGTCATTCAAATTGTTGTTTCCCTGTATGTAGTGTGTCATTTTTCTGTCAGATTTC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AAGGTATTTATCTTTAGTTTTTAGCCATTTCATTATGTTGGGGATGAGTTTCCTTGTTTTATTCCCTTTGGAAT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TTGCTCCAATTCATAAATTTGCAGTTTTATGTCTTTTACCAAACTTAGAGGTTTTCAGCCTAATTTCTAAAAAT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ACTTTTTATTAGCCTGATTTTCATCTTTATAGGAAATAGTTTAAGTGATGACAAGTTCCAATAGCTTATATGCC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CAGAAGGCCTTCAAAATAAGAATTTTGAAAGAATACAGAAAACAAACTTTTATATCCTTCTCATGTCTTCTACT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GTAAAATTCATATGCTTTGCTACTCTAAACCTAGTTTGAAATCAACAGTCTTGAGAATAGATGAAAATTTTGAT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GAATAGTGGAATTCTTTTAAATGGAAACCTCTTACATGTGATTTTCCTTGCCATCTAGAAATAAACCATAGTAT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TTATGTTGAATCAATCAATATTATATTTTGTTTTTTTCCTCCTCTTCTGAGACTCTTATTGTGGAAATGTTAGA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  CTTTTATGTTTTCCTAAATGTCCCTGATATTCTACTTATTTAGAACATCTTTTCATTTTTTCCATTATTCTGAT  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TGGGTAATTTTAATTTGTCTATTTTCAAATTTGCTGGAGTGTTCACCTGTTGTTATCTGTGTCGTCCCACTGAG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGCATTCACCACCTTTTAAATTTTGGTCACTGTATGTATCAGTTCTAAAATTTCCATTTTGTTCTCTATATTTT  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  AAATTTCTTGCCTTATATTCTATTTTCCTGCAAATGTGTCAGCATTTGCTTGTTTGAGCTTTTTTTTTTTCAAG  3848

Query    1  ATGGAGTCTC-GCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCA  73
            |..|.||||| .|||||||.||||||||||||||||||||...||||||.|||||||||||||||||||| ||.
Sbjct 3849  ACAGGGTCTCAACTCTGTTACCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGCCT-CCT  3921

Query   74  GGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCAC-GCCCGGCTAA  146
            |||||||||||||.||.||||||||||||||||||||||||||.||.||.||||||||||||| ||||.|||||
Sbjct 3922  GGTTCAAGCGATTATTGTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATGCACCACCACAGCCCAGCTAA  3995

Query  147  --TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGA  218
              ||||||||||||.||.|||||.|.|||||||.|||||.|.|||||||||.|||||||||||.||||||||||
Sbjct 3996  TTTTTTGTATTTTTAGTAGAGACAGAGTTTTGCTATGTTGGCCAGGCTGGTTTTGAACTCCTGGCCTCAAGTGA  4069

Query  219  TCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA------------------------------------------  249
            |||| |||||||.|||||||||||||.||.||                                          
Sbjct 4070  TCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCACTACACCTGGCACATTTGAGTATTTTTTTTTT  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  TTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCATCTAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACT  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  GCAGCCTCTGTCTCCCGGGCTCAAGCGATTCTCTTGCCTCAGCCTCCTGAGTAGCTAGGACTACAGGTGCATGC  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  CAACACGCCCGGCTAATTTTTTTTTAAAAATATTTTTAGTAGAGACAGGGTTTCACCATTTTGGCCAGGATGGT  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  CTTGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTG  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  CCTGGCCTCATTTGAGTATTTTTATAATGTCTCTTTTAAAGTCTTTGTCAGATAATTTCACTGTACATGTTATT  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  CAGTGTTTGGTGTCCACTGAGTTGTCATTTGCCAGACAAGTGGAGATTTTTGCAGCTCATCCTTGTATTCTCAG  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  TAGTTCCGATATGTACCCTCGAAATGTGAATGTTATCTTATGAGACTCTGTTTTATTTGTATCCAACAGAAGAT  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  GTTTATTATTTATTTGGCTTTCTGTGAACTGAGGTCTTAATATCAGCTCATTTTAAAAGTCTTTGCAGTGGTAT  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  TCGGATCTATCCTGTGTGTGCCTATGAGATTGGGTGCAGTGTATCCTGTTAGCTCCATTCTCAGGGCGTTTGAA  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  TGTGAATTAGGACCAGCGCAATGAATGCTCAAGTTGGGGTTGGGCGTTAGAATTCATAAAAGTCTTTATATGCT  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  CAGATTCTGCAGCTCCATCCTCTTCATGATTGTGATCGTAAGGACAGTGGAATTTTGCAGTTGTCTATACCTTA  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  TCTTGAAGTAGAACTAAATTGTTACATTTGAAGAATGTACTTCATAAATTTACAAAAATAAAAAAATAGGTTAA  5031

Query  250  -----------------------------------  249
                                               
Sbjct 5032  TGTTATTAAAACAAAAAGGCACACAAAAAAAAAAA  5066

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