Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_038880.1
Aligned Length:
2950
Identities:
216
Gaps:
2705

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CACTCTGCGCCGACCGGCTGGGCCTGGCACCCGCGGGCGGCCCCAGCCTCAGTCTCCAGCTACCTTTGCCTCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGGCCGCCCCCAGGCAGAGCTGCGATCCCACCGCCGGGGGTGCAGGGAGAGGGAAGATCTGGCCTCCTTGGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTTTGCGTGGGCTCTTCAGAGCGTGAGCGCCGGGGAGGGACTCCGGAGAAAAGCTTGGGGGGCTGCGTATTGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGCTCCCCAAGCTGGGCGTCAGGACCAACCCCGCCGCCCCCACGGGCCTGACGGGAGAGGAGGAAGGGCTCGGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACGGTCGGCTCGCCGAGCCAACCAGGTGGCGCCTGAAGAGCTGTCCATGGTGTCGACAGCCCAGCAAACGGCAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGAGTTCCTAGTCTGAGTGTCTGGATAGGTAGCAGAAGAAAAACTAATGCCTGCTCTGGGACAGTTCTGTTCGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCCTTTTCTTGTGTGTTCTGGAGCTCACAGGGTTCTATCGAAGAGTGCTTAGGTGTATACGATGGAGAGTGGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACGTCACAAACCAGGATCTCAAGGCTGAGTCCAACAAAACATGGCCGTAGGGAGGCCACGACAGCTGTGGTTGT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CACCGACGGATGAATAGCTTTTGCCAACCGTGGAATTTAGTAACTAAAGGCACCTAACCCTTTTATCTCATCCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CATTTTTCAACAAATGGTGCTTCCTGGCTAATATCAGCGTGTCCCATAGATTTCTGCTTCCATTGAATAGACCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AATAAGAAAGAGAATGAAGTCAAAGCCAACAGGGCAGAAAGAAATTGAAAACCTGAAGAACCCAGCACTCAAAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGTCTCCACTTGCGTTTGCTTTTTCTTTACCTCTTCTCCTTCTGGTTTTCAACAGCCAAAGCAGGATTTAAATT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGGTTATGTTGCAAAAATCATTTCCCTCTTCAGGCCCTGTCATGTGACTTGATTTTTTCGTCCATTTTAGAGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCTGTACCCACCCTGGTTTCAGGACACGGAACTAAATTTATTAGAAAAGAAGCCACTTCAAGTCATGAAGGAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AACACAAAGATTCTTGGATTTAGTTCTAAGAACTAGAGGGGATTTCTATGTCAGTACTGTCTCAGAAAAAACTG  1110

Query    1  ---------------------------------------------ATGGAGTCTCGCTCTGT-TGCCCAGGCTG  28
                                                         |.||||||||||||||| .|||||||||.
Sbjct 1111  TTGATATCAAATGTGTTGCTTGAGAAGTACCTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCCGCCCAGGCTA  1184

Query   29  GAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTC  102
            ||||||||||||..||||||||||||||||||.|||.|||||||.||||||.||..||||.|||||||||||||
Sbjct 1185  GAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCGTTCTCCTGCCTCAGCCTC  1258

Query  103  CAGAGTAGCTGGGACTATAGACATG--CACCACCACGCCCGGCTAA-TTTTGTATTTTTGGTCGAGACGGGGTT  173
            |.||||||||||||.||.||  .||  ||||||||||||||||||| ||||||||||||.||.|||||.|||||
Sbjct 1259  CCGAGTAGCTGGGATTACAG--GTGCCCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTT  1330

Query  174  TTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAAGTGTTG  246
            |..||.||||||.||||.||||||.||.|||||||||||  |||||||| ||.||||||||||||||||||.||
Sbjct 1331  TCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTC--GTGATCCACCCGCCTCGGCCTCCCAAAGTGCTG  1402

Query  247  AGA-----------------------------------------------------------------------  249
            .||                                                                       
Sbjct 1403  GGATAACAGGCGTGAGCCATCGCGCCCGGCCGAGAGGTACCTTTTATGACAACTGAAATCATTCAGTTTCAAGA  1476

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1477  GGAGTTGGGTACTGAAACCAAACTTGCTTACTCCAAAGCCCAAAATCCTTTCCACCATGCCTGTGTGTCTGTAA  1550

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1551  GGCTACACTAGAAATGCTTCCTTTCTTATAGTGGGAAGCATGGGTACTAAGCTCTTTTACGAACAAGTGTTCTG  1624

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1625  CATATTCCTGGTTCCTTTTTATTTTGGACTGAGGAGATTTAGGTCAAAATTTCTGGGTTCTGGGTTGGAATTCC  1698

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1699  AGCTTCTTTCTTCAAATTAAACTGGGGGGTAGCAAGACTTATTCCTAGATTTGTTAGAAGGCCACAGCTTTTCC  1772

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1773  ACATCTCATTTTAGTCATGAAAAAGACACATGCCCAGAGTTTGAAAAACATAAAGGCAATTTGACTAGTGGCTT  1846

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1847  GATTGGTTCTATCTTCTTTTTCTTGTCCCTCTTTCCTATTTATACTTCTACTTTTGTTACAGCATTTGACAATA  1920

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1921  GTTGGAAAAATTTTCACTGACCTTGAAATGTCTTTGGGATAGGGTGACTTAAAATATAGGTTAAGTGGCATACA  1994

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1995  CAAACTTCTTAGTGAGATCCTAAGGGCCTACAGAGACAGGCTGACACCAACTCAACCCTTGAAACTGTGCAATG  2068

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2069  AAGAGCCTGTGGGAGGCTAAAAAACGCTACTTCAAAAAGAGATCCTTGTCTGTGAATGTTAATTTAGGTTTACA  2142

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2143  GATTTGATTAAGGGTCTTGAGATTATTTTCAATTATCCAGGTGGGCCCTAGAGCCCTAGATGCAATCATAAGTG  2216

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2217  TCCTTATAACAGGGAGGCAGAGGAAAATTAAACACGCACACAGGAGAGAGAGAGAGAGAAAAAAAAGTGATGTG  2290

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2291  AAGACAGCAGCAGAGATTGGAGCGATGTGGCCATAGCCAAGCTATGTCAGCAGCCATCAGAAGTTGGAAGAGGC  2364

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2365  AAGGAAGGATTTGAGCCTAGAGCCTTTGGAAGGAGCATGGCCCTGTTGGTTCTGGCCTCCAGAACTGCAAGAAA  2438

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2439  ATACATTTTTGTTGTTTTAAACCACCCAGTTCATGGTAATTTGTAACACCAGCTACAAGAAATTAACACAAGGC  2512

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2513  TGATGTGACTTTCCATCAGGAGAGAGACAGCCCCAGGTGAGACCTGCCTGCCTCATTGTCTGACAGCTTTCCCA  2586

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2587  GCCTCCTCCAGGCTCCCCTCCGTTTTCTCTTATACGCATTCCCCCAATAAACTTCCTGTACATTTAATACCATC  2660

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2661  TCAGTGTCTGCTCCCAGGAGGACCCTAACTGACACACTGGGGCATTTAGCCTCCAATTCCTTTTCTCCCTTGGC  2734

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2735  TGAGATCTGTTCCAGGAAGTATCTCCAGGACACTCCAGCCTGTTGCACAGGCCAAAGAAAAGCCCTCAGGCAGA  2808

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2809  GGAGCAAATACTTGCAAGAGGACACCAGTGGCAAGAACAGGGACATGGTGAGACTTCGACATCATTGGCTACAG  2882

Query  250  ----------------------------------------------------------------  249
                                                                            
Sbjct 2883  TAGTACTAGTCACTCTTGACTGTGGTTTATGTTGTTTCAATAAAGTAGCTTTCCTTCTCAAAAA  2946

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