Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_109965.1
Aligned Length:
1936
Identities:
218
Gaps:
1691

Alignment

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    |.
Sbjct    1  AAATGAATTTTTGGGATGGTACAAGGTAAGAGTCAATGTTCCCTCTCTCTCTCTCCTTTTTTTTTTTTTAAGAC  74

Query    3  GGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGT  76
            |||||||.|.|||||||.|||||||||||||||.||||...|||||||.|||||||||||||.|||||||||||
Sbjct   75  GGAGTCTTGTTCTGTTGGCCAGGCTGGAGTGCACTGGCACAATCTCGGTTCACTGCAACCTCCGCCTCCCAGGT  148

Query   77  TCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCA--CCACCACGCCCGGCTAA-T  147
            ||||||||||||.||||||||||||||.|.||||||||||.||.||.|  |||  |||||||||||.||||| |
Sbjct  149  TCAAGCGATTCTCCTGCCTCAGCCTCCTGCGTAGCTGGGATTACAGGC--GCACGCCACCACGCCCAGCTAATT  220

Query  148  TTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGT----CAGGCTGGTCTTGAACTCCTGACCTCAAGTG  217
            |||||||||||.||.||||||||||||..|||||||.||    ||||.||||||.||.||||||||.||  |||
Sbjct  221  TTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTTGGCCAGGATGGTCTCGATCTCCTGACTTC--GTG  292

Query  218  ATCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA-----------------------------------------  249
            ||||| ||||||||||||||||||||||||.||                                         
Sbjct  293  ATCCACCCACCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGACACTGCACCCAGCCCTCTCTTAATTTT  366

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  367  TTTAACATACAGATAGCCAGTTCTTTCCTGATTTGTAAGTTTTTATTTAAACCAGAGTTAGAAAAATAATTAAA  440

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  441  ATAACACTACCTCTAAACACTCAAAACCACTGCTATGACATAATCCTGCCATTTCAGTAGAACAGAAAATCCCC  514

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  515  ACGCCTTCCCCTCAGCTCGGAGGGCACAGGACTGGGCAGCAAGCTCCACCAGTTTGTAGAAGGAGTTCAACTTC  588

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  589  CAGACAGCAGGGAAATGCCTTTCTCTGAAGTTATTACATGAGTTCACACTGAAGGGAAAGAAGAAAGTGAGCCT  662

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  663  TATCATTTTCCCAAGATGCTGTGAGATGTGTTGGATTTACTCTCACTCATAATTGTGCAGGATGGTTGTTTTGT  736

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  737  TTTGTTTTGAGGCAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGGTCTCAATTCACTGCAACCT  810

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  811  CTGCCTCCAGGGTTCAAGCAATTCTCCTGCCTCCGCCTCCCGAGTAGCTAGAGTCACAGGTGTGCACCACCATG  884

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  885  CCTTGCTAATTTTTGTATTTTTAGCAGAGATGGGGTTTCATCATGTTGGCCAGGCTGGACTCCAACTCCTGACC  958

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct  959  TGAAGTGATCCGCCCCCCTCAACCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGTGCCTAGCCACAGGT  1032

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1033  ATGTTCGGGATGGTTTCAACCAACATCAATAGAACCAACTAAGAATAGATGGCCTTCAGCAACACAGAGGGGTA  1106

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1107  GCACAGGAGTTCCAAAGATCAGTAGTTTGAAAATCAGGTCACAGGGAGTCCACGCTATATGATCTTGGGGTCTC  1180

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1181  ACTTTGTGGCCCAGCTGGAATACCGTGGTGCAAACACGGTTCACTGCAGCCTTGACCTCCCAAATTCAAAGATG  1254

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1255  AGGTTTCACCATGTTGCCTAGGCTGGTCTCAAACTTCTGACATCAAGCAATCTGCCCACCCTGGCCTCCCAAAG  1328

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1329  TGTTGGGATTACAGCTGTGAGCCACTGCACCCGGCAAATAATCTTTTTAAAACAGATTGTGATTCCGCAGGTCT  1402

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1403  GAGGTGGCGTCTGAGATTCTGCATTCCTAATAGGCTTCCAGAGACAGCATCTCACCATGATGCCCGACTAGCCT  1476

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1477  TGAACTCCTGGCTTCAAGTGATCCTCCCCATTCGGCCTCCCAAAGCGCTGGGATTATAGGTGTGAGCCACCATA  1550

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1551  ACAGGCCCAAAAGTAACATCTGATCAAAAATCTCAAGGTGATGCGGGAACAAGCCATGAGGCTACTCAGGGAAA  1624

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1625  CGTGCTCTAAATAGAAGGAATAACAAGTACAAAAGCCCTGATATGCGAGCTAAGGTGCTCAGGGACAACAAACA  1698

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1699  AAGCCAATATGGTTGGGGTAAAACAAGCAAGGGAGAGAAGAGAAGCAGATAAAATAAGAGTTACAAAGCAGTTC  1772

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1773  ATGTGGGACTTTGTAGACGAGTATAAGGACTGTGGCTTTTTCAGTGAATGAGAATAACTGGCAGGTTCTGAGCA  1846

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1847  AGGAGGGATATGACCTGATTAATTTTAAATGGATAATGTAATCGTGTTTAAACTCAAAAAGCTGAATTAAACAC  1920

Query  250  ------------  249
                        
Sbjct 1921  CTGTTCCATCTC  1932

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