Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_110253.2
Aligned Length:
5784
Identities:
216
Gaps:
5539

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTGGTGGTGGCGGCGGCGGCGGCGGCCCGGGCTCCGGCTGTCGGGGAAGCTGCTGAGCTGTGATGGTGATGAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGGTGAAAATGGCGGATCTTTCGAAATACAATCCCGGCCCCTGACATACCAGAGGCGGCGGCGACGGCGACGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCCACCCCGGCTCCCTTCTCGGTCCCCGGGTACCCTGGAGCGCTCCAGTTTGGACAAACTGGGAAAGGAAGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTGGCCAGAGCTATCGTGCACGGGCAAAACAAGCCCCGCCGGGGCTCGGGATTGCCCAGGACCTTCTGGAGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTACCTCGGAGCCCGAGGGAGGAGAAAGCGGCAGCCGCTGGAGTGCCTGATCAACTTTCTAGCGGGAGAACGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCATGGAGGTGGTGCCAGCTGAGGTGAATAGTTTGCTTCCAGAGGAAATAATGGACACTGGTATAACTTTAGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GATGATGATAGTATTGAGGCTGTTATTGTTTCATCCCCAATTCCCATGGAGACAGAACTGGAAGAAATTGTCAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CATAAATTCTACTGGTGACTCTACAGCCACGCCCATTTCCACGGAACCAATCACAGTGTACAGTAACCACACTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACCAAGTTGCAGTGAATACCACAATTACTAAAGCAGATTCTAATACCACAGTGAAACCAGCTTTTCCAAGTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTCAAAAACTTGGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATTATTTTAAACAAAGTATCACAGAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATCTGATCTTAAACTTGGCAATCAGACCCTTAAACCAGATGGACAGAAGTTAATTTTAACAACTTTGGGCAAGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CTGGTTCACCAATTGTTTTAGCACTACCCCATAGCCAACTACCCCAGGCTCAGAAAGTTACAACTCAGGCCCAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCAGGAGATGCTAAGTTACCACCGCAGCAAATTAAAGTAGTTACCATTGGAGGGAGGCCAGAGGTGAAACCTGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CATTGGTGTCTCAGCATTGACCCCAGGAAGTCAACTGATTAATACTACAACTCAGCCCTCTGTGTTACAGACCC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AACAGTTAAAAACAGTACAGGTAGGGTTCTTTCACAGTCTACTCCCGGAACTCCATCAAAGACCATAACAATAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CTGAAAGTGGTGTTATTGGATCAACTTTAAATTCTACAACACAGACACCAAATAAAATAGCCATCTCACCTTTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AAATCGCCAAATAAGCAAAGCCAGTGGTTGTTAATACAACCCCAGTGCGGATGTCAGTTCCAATTGTCTCAGCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAGGCTGTCAAACAAGTTGTTCCAAAACCAATCAATCCAACTTCACAAATAGTAACTACTAGCCAGCCACAGCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ACGGCTTATCATGCCTGCCACACCACTGCCACAGATCCAGCCCAACCTCACTAACCTGCCACCAGGCACTGTCC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGGCACCAGCTCCGGGAACAGGGAATGTGGGTTATGCAGTGCTTCCAGCTCAGTATGTTACTCAGCTACAGCAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCTTCATATGTATCAATAGCAAGCAACTCTACCTTTACTGGAACATCTGGTATCCAGACCCAGGCACGGCTTCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATTCAATGGCATAATCCCATCAGAGTCGGCCAGTCGGCCCCGAAAGCCCTGTAATTGTACAAAATCACTGTGTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGAAATTGTATTGTGATTGCTTTGCAAATGGTGAATTTTGCAACAACTGCAATTGTACTAATTGTTACAACAAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTGGAACATGAAAATGAAAGGCAAAAAGCAATAAAGGCATGCCTTGACAGAAATCCAGAAGCCTTTAAGCCTAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GATAGGGAAAGGAAAGGAGGGAGAATCTGATCGACGTCATAGCAAAGGGTGTAATTGCAAACGATCAGGATGTC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTAAAAACTACTGTGAATGCTATGAGGCAAAAATAATGTGTTCCTCAATATGCAAATGTATTGGCTGTAAGAAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTTGAAGAAAGCCCGGAAAGGAAGACATTGATGCATTTGGCAGATGCAGCTGAAGTAAGGGTACAGCAACAAAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AGCAGCCAAGACGAAGTTATCCTCTCAAATTTCAGACTTGCTTACTAGGCCAACACCAGCTTTAAATAGTGGAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCGGAAAATTGCCATTTACATTTGTAACTAAGGAAGTAGCTGAAGCCACATGTAATTGCCTCCTTGCCCAGGCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAGCAGGCAGACAAGAAGGGAAAATCAAAGGCAGCAGCGGAACGGATGATACTTGAGGAATTCGGACGATGTTT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GATGAGTGTCATCAACTCTGCAGGAAAGGCAAAAAGTGACCCTTGTGCCATGAATTGCTAACTCTTGCACAAAA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GACTGATAAATGGAACTGTACAGAAAATTTAAGGTGCAGGGACACTTGATTTTCTGGAAGAAAAACAATTACTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TATTTTAATTCAGTCCTTGTTTTAAAAGACCTGAAATTATAATACTGAAGGAGAAGAAATTTTAAATGAGGAAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTAGTACATTTTAAATCTTAGTTAAATCTGCTTATGCCCCTTCTAAATTGAATTTTTCTTTATTATATAGATTT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTTAATTTGCTTGGGTTTCTTAAGAATTAGATGTTCTCTTTCTGATACCTTTGACAAAAAATGTTTATAAATTC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATAATTTATAATGTATGGTGTTGTATGACTTTGTTAATAGAAAAGCCAAAGCAGCAGTGGTTAGCACCCATT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CTTTGGGACTTGATCTAGAATATCTGCAGACAGAATGTTACATAAACAAATTCTTATGAAACACATTCAAATGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CATTTTGTATTTAGAAAAGGACTATCTTTTAAAGAAAAAGCAGCCTTTTAGGGCCGATTCTGGAATAATATCCT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GTTGTCACTTTGGGAATGTCAGAAGGGGAAACAATCCCCAGGCACACTAAAAATTTTTTAAAGTTATTTAAAAA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AACATATAAAATATTAAAGGACAGTAAATCTCAGAGGATGGGCAATGTGTTTCTATAATAAGGAAAGGCTAACA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GATGCTCTGGGCTGTCTCCATTTTCTTTCAAAGAGGTGGTATGTATTTGAAGTAATAAATTGTCAAAGTGATTA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CTGGGTACTATTAAAATGATAGGTGGATATAAATGGAAGTAAACATTATGTAGTGATAATATAGAACCTCACAT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AGTAATCAAGTATAAAATTTGGCATGGGTGGAGAAACAAAGAATAGGGAAGCTGCAAAAGATGAATTTAGAGAA  3182

Query    1  -------------------------------------------------------ATGGAGTCTCGCTCTGTTG  19
                                                                   |.|||||||||||.|||.|
Sbjct 3183  GTTTTCATCTATACAATCAATTATTTTTACAGACTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTGTGTAG  3256

Query   20  CCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAA--CCTCTGCCTCCCAGGTTCAAGCGATTCTTCT  91
            ||||||||||||||||.|||...||||||.|||||||||||  ||||||||||||||||||||||||||||.||
Sbjct 3257  CCCAGGCTGGAGTGCAATGGTGAGATCTCAGCTCACTGCAACGCCTCTGCCTCCCAGGTTCAAGCGATTCTCCT  3330

Query   92  GCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCA--CCACCACGCCCGGCTAA--TTTTGTATTTTTGGT  161
            ||||||||||||.|.|||||||||||||.||  .||||  ||||||.||||||||.|  ||||||||||||.||
Sbjct 3331  GCCTCAGCCTCCCGTGTAGCTGGGACTACAG--GTGCATGCCACCATGCCCGGCTCATTTTTTGTATTTTTAGT  3402

Query  162  CGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGA-TCCACCACCTCGGCCT  234
            .||||||||||||..||.||||||.||||.||||||.||.|||||||||||  |||| ||..||.|||||||||
Sbjct 3403  AGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTC--GTGATTCGCCCGCCTCGGCCT  3474

Query  235  CCCAAAGTGTTGAGA-----------------------------------------------------------  249
            |||||||||.||.||                                                           
Sbjct 3475  CCCAAAGTGCTGGGATTACAGGCATAAGCCGCCGTGCCAGGCCCTTTTTATAGACTTTTGAACTAAGAGGTTTC  3548

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3549  AAACCAAATCGCAACTCTTACTTGATTTACAGAAATGGGCCTCCTAACAAAATTTTCAAAATTGTGGTGGGATT  3622

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3623  TCTTTTTATAAGGGAAGTTTAATATGGCATTATTTTCAGCCAGTGATTTGGAAGGTCTGTTTTCCTATAATTAC  3696

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3697  TAAAATAACCTAAATCATTTTCAGTATTCAAAAACTCTATGAATTTAAGAGCCTGTTGTGACAGGACTCTTGAT  3770

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3771  TTTATGACAAGAAAAAACCATGTTGGAATTCAGGCATTTTGTTAGGTACCTTAATCATCAGTAATTAGTATATG  3844

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3845  ATTATTTCATTTCCTACAAGGACTCTATAGTTGTATGTATTAAGTGTGTATATATGTTCATATGAACATGCAAG  3918

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3919  ATATAGGCAATAGAAATTAAGTAATCCAAAAGAGGATTCCGTTATTCACTAAAGTATCTTCCTTTTAAATTTGG  3992

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3993  ATTTATAAAATCATAGTGCAGTAACTTTAAATGTAGATAGTTCAAACATTCTTAGCACCTCAATCTAGTATGTT  4066

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4067  TAATTAAAATTTGTATAAATGTAAATTAGTGTAAGAGGGTAAAATAATAATCAAGTTATTTTTCAAAAGATTGC  4140

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4141  AATAAGTTTTTGGTCTAAACTTAAACTTTGTTCATTTTGTACATACTCTGTGTTAATTCTAATTGCACCTTTGT  4214

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4215  GATGTGTATTTATATACAGTGTGCAGAAAATGTTCGTGAAATTTTGATTACAATTGTAGATTATGTATGATGGC  4288

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4289  ATTGCTTACGAATGTTTTGCTTGTAAAAAAATTTCAAGGTGCAATCAAATGCTACTAGTTTTTCTGATTTTCAA  4362

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4363  AAATCTATCTATCTAAAATATTAAGCCTTTTCCTTCCTGTGTAGTACTTACTAAATAACTTTTTGTATTCAGGC  4436

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4437  ATTTGCATCAAATTGCTGAACAAGATGAATAGCCACATTAATTCAATGATTTTAAAAGACTATTTGGGGAGGGT  4510

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4511  TGGGTATATAATTTTTTAGCTCTATTTACATCCCAAAGTAGAAAGATTAAATTTATATTTACTAGAGCTATTCA  4584

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4585  AAGAATACACTTTTCTATATTGTAAAAACAGGACAGCAAAGTAAATCATACAGAAAATAAACATTTATACTATT  4658

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4659  CTGTAAAAAAGGTTTTGCATTTTTTCTTTAGTATAATAACACCACTTTATTAACCATTTAATATGCAAAAAACC  4732

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4733  TTTTAAATTATCTGAAGTAAATTTGACATTACTTCTGAAAACACACAACTAAAAAATTCTATCATTTTGCTCAG  4806

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4807  TTATTACTAACATAAATTGCTTTGAAATGAGAATATGTCTTCTCTTTTTTTCCCCACTGTTTCTTTTAAGAGCA  4880

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4881  GAAACTCAGCCGGGCATGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGTCAAGGCGGGTGAATCACTTG  4954

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4955  AGTCCAGGAGTTCTAGACCAGCCCAGGCTACATGGTGAAACCCTGTCTCTACTAAAAATATAAAAAAATTCACT  5028

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5029  GCGTGTGGTGGCGCACACCTGCAGTCCTCGCTACTTTGAAGGCCTGAGCCTGCAGAGGTTGAGGCTGTAGTGAG  5102

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5103  TCAAAATTACACCACTGCACTCCAGCCTGGCAATCAGAGTGAGACCTTGTCTCAAAAACAAAAATACCTAGAAA  5176

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5177  ATCAATCTACTCTGTCTTTTAATGTGAAATGTTCTTATGATAGCTATCTTTCTTAGTTTCCTTTTTTTCTGAAG  5250

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5251  CACTAAACACAACCTGTAGGTCTTATCTCTGGGGTCTGGGAAACAGAACCTTAATGTTACAGGTACAAAAGCAA  5324

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5325  ACAGAGTGATTAGTTCCCCATTTTCTGGTAGTGAACAACTGACATTTTTTCAATCTTATGTAAAATGTGAATAA  5398

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5399  AAATAATTTTAGAAAAGTTATCTATTTTTATTGTTCTGTAACACAAATAGTTAAGAAAATGAATACTTGTTATG  5472

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5473  TAAATGAAGCTTCACAGCAGGACCTCCGGCCATAACTTTGATCATGTTGTATCTCTTAAGCATTTTATATAGGA  5546

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5547  ATTCTGGTGTGGCTACCCAAAGCAGAAGGGAAGGCAATCAACTAAAAATCCCTTTCTATTGGAGTTATTTTCAT  5620

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5621  CATGTAAATTACTTCAGGCTTTTCTTGTTAGGGCTTCTTGAATGCACATTTTGTCATTATCTGTATACCAAAGG  5694

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5695  TGAGCTTTTTTTTTTAATCCATGTGATTTTATGAGTTGAAAGCTATAAGGTTTTTTTTAATTAAAAATTTCCTT  5768

Query  250  ------------  249
                        
Sbjct 5769  CTAAATGGCAAA  5780

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