Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_110254.2
Aligned Length:
5458
Identities:
216
Gaps:
5213

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTGGTGGTGGCGGCGGCGGCGGCGGCCCGGGCTCCGGCTGTCGGGGAAGCTGCTGAGCTGTGATGGTGATGAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGGTGAAAATGGCGGATCTTTCGAAATACAATCCCGGCCCCTGACATACCAGAGGCGGCGGCGACGGCGACGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCCACCCCGGCTCCCTTCTCGGTCCCCGGGTACCCTGGAGCGCTCCAGTTTGGACAAACTGGGAAAGGAAGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTGGCCAGAGCTATCGTGCACGGGCAAAACAAGCCCCGCCGGGGCTCGGGATTGCCCAGGACCTTCTGGAGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTACCTCGGAGCCCGAGGGAGGAGAAAGCGGCAGCCGCTGGAGTGCCTGATCAACTTTCTAGCGGGAGAACGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCATGGAGGTGGTGCCAGCTGAGATTGCTAAGAAGCCTCGAACGCCAACCTCTGGTCCAGTAATCACGAAGCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATCTTTGCAAAACCAATTAATAGTAAAGCAGTTACAGGACAGACAACTCAAGTTTCACCACCAGTTATTGCAGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTTCTTTCACAGTCTACTCCCGGAACTCCATCAAAGACCATAACAATATCTGAAAGTGGTGTTATTGGATCAAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTAAATTCTACAACACAGACACCAAATAAAATAGCCATCTCACCTTTGAAATCGCCAAATAAGGCAGTGAAAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CAACTGTGCAGACCATCACTGTTGGAGGAGTGAGCACATCACAGTTTAAGACAATTATTCCTCTGGCAACTGCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCAATGTCCAGCAGATTCAAGTGCCTGGAAGCAAGTTTCATTATGTCCGACTTGTTACTGCCACATCAGCCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAGCTCAACCCAGCCAGTTAGTCAGAATCCCAGTACAAACACTCAGCCTCTTCAGCAAGCAAAGCCAGTGGTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTAATACAACCCCAGTGCGGATGTCAGTTCCAATTGTCTCAGCTCAGGCTGTCAAACAAGTTGTTCCAAAACCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ATCAATCCAACTTCACAAATAGTAACTACTAGCCAGCCACAGCAACGGCTTATCATGCCTGCCACACCACTGCC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACAGATCCAGCCCAACCTCACTAACCTGCCACCAGGCACTGTCCTGGCACCAGCTCCGGGAACAGGGAATGTGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTTATGCAGTGCTTCCAGCTCAGTATGTTACTCAGCTACAGCAGTCTTCATATGTATCAATAGCAAGCAACTCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACCTTTACTGGAACATCTGGTATCCAGACCCAGGCACGGCTTCCATTCAATGGCATAATCCCATCAGAGTCGGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAGTCGGCCCCGAAAGCCCTGTAATTGTACAAAATCACTGTGTTTGAAATTGTATTGTGATTGCTTTGCAAATG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGAATTTTGCAACAACTGCAATTGTACTAATTGTTACAACAATTTGGAACATGAAAATGAAAGGCAAAAAGCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATAAAGGCATGCCTTGACAGAAATCCAGAAGCCTTTAAGCCTAAGATAGGGAAAGGAAAGGAGGGAGAATCTGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCGACGTCATAGCAAAGGGTGTAATTGCAAACGATCAGGATGTCTTAAAAACTACTGTGAATGCTATGAGGCAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAATAATGTGTTCCTCAATATGCAAATGTATTGGCTGTAAGAATTTTGAAGAAAGCCCGGAAAGGAAGACATTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGCATTTGGCAGATGCAGCTGAAGTAAGGGTACAGCAACAAACAGCAGCCAAGACGAAGTTATCCTCTCAAAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTCAGACTTGCTTACTAGGCCAACACCAGCTTTAAATAGTGGAGGCGGAAAATTGCCATTTACATTTGTAACTA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGGAAGTAGCTGAAGCCACATGTAATTGCCTCCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGAAAATCAAAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCAGCAGCGGAACGGATGATACTTGAGGAATTCGGACGATGTTTGATGAGTGTCATCAACTCTGCAGGAAAGGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAAAAGTGACCCTTGTGCCATGAATTGCTAACTCTTGCACAAAAGACTGATAAATGGAACTGTACAGAAAATTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAGGTGCAGGGACACTTGATTTTCTGGAAGAAAAACAATTACTGTATTTTAATTCAGTCCTTGTTTTAAAAGAC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTGAAATTATAATACTGAAGGAGAAGAAATTTTAAATGAGGAAATTAGTACATTTTAAATCTTAGTTAAATCTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTTATGCCCCTTCTAAATTGAATTTTTCTTTATTATATAGATTTTTTAATTTGCTTGGGTTTCTTAAGAATTAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATGTTCTCTTTCTGATACCTTTGACAAAAAATGTTTATAAATTCATATAATTTATAATGTATGGTGTTGTATGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CTTTGTTAATAGAAAAGCCAAAGCAGCAGTGGTTAGCACCCATTCTTTGGGACTTGATCTAGAATATCTGCAGA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CAGAATGTTACATAAACAAATTCTTATGAAACACATTCAAATGACATTTTGTATTTAGAAAAGGACTATCTTTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AAAGAAAAAGCAGCCTTTTAGGGCCGATTCTGGAATAATATCCTGTTGTCACTTTGGGAATGTCAGAAGGGGAA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACAATCCCCAGGCACACTAAAAATTTTTTAAAGTTATTTAAAAAAACATATAAAATATTAAAGGACAGTAAATC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCAGAGGATGGGCAATGTGTTTCTATAATAAGGAAAGGCTAACAGATGCTCTGGGCTGTCTCCATTTTCTTTCA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAGAGGTGGTATGTATTTGAAGTAATAAATTGTCAAAGTGATTACTGGGTACTATTAAAATGATAGGTGGATAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AAATGGAAGTAAACATTATGTAGTGATAATATAGAACCTCACATAGTAATCAAGTATAAAATTTGGCATGGGTG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAGAAACAAAGAATAGGGAAGCTGCAAAAGATGAATTTAGAGAAGTTTTCATCTATACAATCAATTATTTTTAC  2886

Query    1  -------------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCG  49
                                     |.|||||||||||.|||.|||||||||||||||||.|||...||||||.
Sbjct 2887  AGACTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTGTGTAGCCCAGGCTGGAGTGCAATGGTGAGATCTCA  2960

Query   50  GCTCACTGCAA--CCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATA  121
            |||||||||||  ||||||||||||||||||||||||||||.||||||||||||||.|.|||||||||||||.|
Sbjct 2961  GCTCACTGCAACGCCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGTGTAGCTGGGACTACA  3034

Query  122  GACATGCA--CCACCACGCCCGGCTAA--TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGC  191
            |  .||||  ||||||.||||||||.|  ||||||||||||.||.||||||||||||..||.||||||.||||.
Sbjct 3035  G--GTGCATGCCACCATGCCCGGCTCATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGA  3106

Query  192  TGGTCTTGAACTCCTGACCTCAAGTGA-TCCACCACCTCGGCCTCCCAAAGTGTTGAGA---------------  249
            ||||||.||.|||||||||||  |||| ||..||.||||||||||||||||||.||.||               
Sbjct 3107  TGGTCTCGATCTCCTGACCTC--GTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCC  3178

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3179  GCCGTGCCAGGCCCTTTTTATAGACTTTTGAACTAAGAGGTTTCAAACCAAATCGCAACTCTTACTTGATTTAC  3252

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3253  AGAAATGGGCCTCCTAACAAAATTTTCAAAATTGTGGTGGGATTTCTTTTTATAAGGGAAGTTTAATATGGCAT  3326

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3327  TATTTTCAGCCAGTGATTTGGAAGGTCTGTTTTCCTATAATTACTAAAATAACCTAAATCATTTTCAGTATTCA  3400

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3401  AAAACTCTATGAATTTAAGAGCCTGTTGTGACAGGACTCTTGATTTTATGACAAGAAAAAACCATGTTGGAATT  3474

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3475  CAGGCATTTTGTTAGGTACCTTAATCATCAGTAATTAGTATATGATTATTTCATTTCCTACAAGGACTCTATAG  3548

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3549  TTGTATGTATTAAGTGTGTATATATGTTCATATGAACATGCAAGATATAGGCAATAGAAATTAAGTAATCCAAA  3622

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3623  AGAGGATTCCGTTATTCACTAAAGTATCTTCCTTTTAAATTTGGATTTATAAAATCATAGTGCAGTAACTTTAA  3696

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3697  ATGTAGATAGTTCAAACATTCTTAGCACCTCAATCTAGTATGTTTAATTAAAATTTGTATAAATGTAAATTAGT  3770

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3771  GTAAGAGGGTAAAATAATAATCAAGTTATTTTTCAAAAGATTGCAATAAGTTTTTGGTCTAAACTTAAACTTTG  3844

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3845  TTCATTTTGTACATACTCTGTGTTAATTCTAATTGCACCTTTGTGATGTGTATTTATATACAGTGTGCAGAAAA  3918

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3919  TGTTCGTGAAATTTTGATTACAATTGTAGATTATGTATGATGGCATTGCTTACGAATGTTTTGCTTGTAAAAAA  3992

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3993  ATTTCAAGGTGCAATCAAATGCTACTAGTTTTTCTGATTTTCAAAAATCTATCTATCTAAAATATTAAGCCTTT  4066

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4067  TCCTTCCTGTGTAGTACTTACTAAATAACTTTTTGTATTCAGGCATTTGCATCAAATTGCTGAACAAGATGAAT  4140

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4141  AGCCACATTAATTCAATGATTTTAAAAGACTATTTGGGGAGGGTTGGGTATATAATTTTTTAGCTCTATTTACA  4214

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4215  TCCCAAAGTAGAAAGATTAAATTTATATTTACTAGAGCTATTCAAAGAATACACTTTTCTATATTGTAAAAACA  4288

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4289  GGACAGCAAAGTAAATCATACAGAAAATAAACATTTATACTATTCTGTAAAAAAGGTTTTGCATTTTTTCTTTA  4362

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4363  GTATAATAACACCACTTTATTAACCATTTAATATGCAAAAAACCTTTTAAATTATCTGAAGTAAATTTGACATT  4436

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4437  ACTTCTGAAAACACACAACTAAAAAATTCTATCATTTTGCTCAGTTATTACTAACATAAATTGCTTTGAAATGA  4510

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4511  GAATATGTCTTCTCTTTTTTTCCCCACTGTTTCTTTTAAGAGCAGAAACTCAGCCGGGCATGGTGGCTCACGCC  4584

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4585  TGTAATTCCAGCACTTTGGGAGGTCAAGGCGGGTGAATCACTTGAGTCCAGGAGTTCTAGACCAGCCCAGGCTA  4658

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4659  CATGGTGAAACCCTGTCTCTACTAAAAATATAAAAAAATTCACTGCGTGTGGTGGCGCACACCTGCAGTCCTCG  4732

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4733  CTACTTTGAAGGCCTGAGCCTGCAGAGGTTGAGGCTGTAGTGAGTCAAAATTACACCACTGCACTCCAGCCTGG  4806

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4807  CAATCAGAGTGAGACCTTGTCTCAAAAACAAAAATACCTAGAAAATCAATCTACTCTGTCTTTTAATGTGAAAT  4880

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4881  GTTCTTATGATAGCTATCTTTCTTAGTTTCCTTTTTTTCTGAAGCACTAAACACAACCTGTAGGTCTTATCTCT  4954

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4955  GGGGTCTGGGAAACAGAACCTTAATGTTACAGGTACAAAAGCAAACAGAGTGATTAGTTCCCCATTTTCTGGTA  5028

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5029  GTGAACAACTGACATTTTTTCAATCTTATGTAAAATGTGAATAAAAATAATTTTAGAAAAGTTATCTATTTTTA  5102

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5103  TTGTTCTGTAACACAAATAGTTAAGAAAATGAATACTTGTTATGTAAATGAAGCTTCACAGCAGGACCTCCGGC  5176

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5177  CATAACTTTGATCATGTTGTATCTCTTAAGCATTTTATATAGGAATTCTGGTGTGGCTACCCAAAGCAGAAGGG  5250

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5251  AAGGCAATCAACTAAAAATCCCTTTCTATTGGAGTTATTTTCATCATGTAAATTACTTCAGGCTTTTCTTGTTA  5324

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5325  GGGCTTCTTGAATGCACATTTTGTCATTATCTGTATACCAAAGGTGAGCTTTTTTTTTTAATCCATGTGATTTT  5398

Query  250  --------------------------------------------------------  249
                                                                    
Sbjct 5399  ATGAGTTGAAAGCTATAAGGTTTTTTTTAATTAAAAATTTCCTTCTAAATGGCAAA  5454

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