Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- NR_111980.2
- Aligned Length:
- 6076
- Identities:
- 217
- Gaps:
- 5831
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCAAATACCTTTTGTTTCTCTCACGTTGGGGCTACTTGTTTTAGGGCGCAAAGGAACGGCCTCGAAAGGGGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTTCCCCAGCCGAGAACCAGGAATCTTCCCTCGGCCCGCGCGCGCGACCGGCCGGTGCGCCGCGGCCCGCGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAATCCTCCAAACACAGACTGTTTGACTTAGAATCTTCCCTTTTTTACTCCATTCAAGAGCAGCATTCATAAAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCCAGATGATCTGCCTCGGATGCGATTCAAGTGCCCGTACTGCACACATGTGGTGAAGCGGAAGGCAGACCTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGCGCCACCTTCGTTGTCATACAGGAGAAAGGCCCTATCCATGTCAAGCTTGTGGAAAAAGATTTAGCAGGCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGACCATCTAAGTAGCCATTTTCGAACAATGGAGATAAGGATTCCAGATGGCACTTGAGTGAAGATGAGAATAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATCCTATGTGGAGATTGTAGAAGATGGGTCTGCTGATCTGGTCATCCAACAGGTTGATGATAGTGAAGAAGAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGAAAAAGAAATTAAGCCCAACATTAGGTAGCTGTAATGTGAACCAACAGAGCTGGCATGTCTGCAATTTACA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGACTTCCTGTATCTCTCTCTTTCTATGGTCGGAGTCTAGTTAACAAATTTATCACACTGACTTTAAAGAAAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GATCTGATATAACTTGCATGCTTTCTGAACAGGCCATTGTATCCATTCTGAACTTTGTTGCCCTAAAATGTGTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCTGCACTGGAAAGAAAGAACTAGCTTGAGTTGGCTTGATGGATGAACAATTATCCTCTTACTTTCATTACAAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCTCTTACTTTATTCCAGAGATACCTTTTTCTTTTAATATTGGAGGATCTACTTAGCAAACTTTTTTCAAAGAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATACTTTAAATAAATTCACCACAACCAAACTTTATGTAAGACAATTTCAAGGTGTTTCAAAAACACATAACTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCAATGTTTAATTTCACAGGGAACCAGTTAAGAGCACATTTAAGGATCTGGCAACCCACCTTACTAAACAAATT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTCTTTCTATTAATTTGAGATCTGAAACAACCTGTCATTACTCTGATATCCTGAACGTTTAAGGATTATGGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAAGACTAAAGTGTTTGAAATCATTCATATTTGAAATTTTTATCATTAGCTTAAAAATTACTCTCAGTATTGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAAAAAAAAAAAAAGTAGAGGCTGGCCAAAGATTATATACAGATATTTTCTTAAAGCAGGAAACTAATGTTGCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TAAAAGTCAAGGTAGTTTGTGAAGACAATCTGTCAATATGGTTGTCCATCTCTCTAAAGAAAAGCAGGCTGGGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCTGTGGCTCATGCCTATAATCCCAATACTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCAGGAGTTTGAAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAAATACAAAATTAGCCGGGCATGGTGGCGGGTGCC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGATTGAACCTGGAAGGCAGAAGTTGCAGTGAGCCG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGATCACACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAGGAAAACAAACTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGAGGTTCTTACCATATGTGAGTGATTTCTAACGTTTATGTAGTGCTATATTATTTATAAAGTACTCTCTCATG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TATTTTCTCAGTGAGGTGGATACTATCTCCGATTTACAAATGAGGAAATTAAGGTCAGAAAGTCTGAGAGAGAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACTGATGATTGGACAGGATCTGATTTTAAACAATCCTCTTTCAGCCTTCTCTCCCTGTATGTCTCCTGAAATG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCAAAGAATAGAAGTCAAACCTCACCAGTTGGCAGTCATTATAAAAATAAGCCAATCAGAATTAGAAAGTATGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGAGGAATTGAATCATTTTCAACAACATACAATATCTTGATCTAGAGATTTTCAAATAATGCTAAGTAATGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCCTACAGTACCTATTGGTATGTTTTTATGTCACGTTATTTATATGTAAATTTAAAGTATAAAACTATTTGAAC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAATTATTCACTTAAATATGTTGAACATTTTTGCTTCTCTTGTTTATATAATATTTTCAAAACAAACTTTTCTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTAGTATACAAAGTTTAAACTTCTCCCCTTTGGGCTGGGCCCAGTGGCTCACGCCTGTAATCCCAGCACTTTGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGGCTGAGGCAGGTGGATCACCGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACTAAAAATACAAAATTAGCCGGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGAAGGCTGAGGCAGGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GGATAGCTTGAACCCAGGAGGCAGAGGCTGCGGTGGGCTGAGGTTGCGCCATTGCACTCCAGCCTGGGCAACAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAACTTCTCCCCTGCATAAATTATGAAACATTCCAAAATT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACAGCTAAATTAGAGAAGCATTGTTTCAGTTCTAAAGGTAAAATCTAAATATCCGAAGTAAAGAACTGAGCTTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATAAAGGTCTCTTCTGCAAGTTATCACAGTGAAGCTTGATAGAATTTCACTGTATATGGAGAGGCTCCATCTAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTACTGTTTTCTTTTTTGTTTTTGTTTTTTTTTCGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGTGCAATCTCAGCTCACTGCAAGCTCCACCTCCCGGGTTCTCGCCATTCTCCTGCCTCAGCCTCCCGAGTAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTGGGACTTACAGGCGCCCACCACCACTCCCAGCTAATTTTTTGTATTTTTAATAGAGATGGGGTTTCACCGTG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTAGCCAGGATGGTCTCAATCTCCTGATCTCGTGATCCGCCCCCCTCGGCCTCCCAAAGTGCTGGGATTACAGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CGTGAGCCACTGCGCCCAGCCAATTTTACTGTATTTTTAAATGCCATGACATACCTCAAAATTATCCTTTTTAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTTACTATTTTCTCTTGTTCTTTCATTAATTATTGTCCTTGATACCAATTTCTAGGCTAAATTGGTTACTTTCT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTTAAAAAATTTAAAAATAGATGAATAACCACTTGTTTCATGGTACTTAATTGAGACTTTTTCAAGATTCCCCT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GATGGCACATTTGCAGTTGCTTCAAGACTGGATGATGTGCATTGAGTTCTCTGTTCTCCCAACATGGCTGTTCC 3256
Query 1 --------------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTC 48
|||||.|||||||||||||.|||.||||||||||||||||.|||||||
Sbjct 3257 TAAATCAGGATTCTGGTTTTTTTGAGATGGACTCTCGCTCTGTTGTCCAAGCTGGAGTGCAGTGGCGTGATCTC 3330
Query 49 GGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAG 122
||||||..|||||||||||||||.|||||||||||||||.||||||||||||||.|||||||.|||||||.||
Sbjct 3331 -GCTCACCACAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCCGGGACTACAG 3403
Query 123 ACATGCACCACCACGCCCGGCTAA-TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGT 195
.||||..||||||.|||.|||||| ||||||||||||.||.|||||.||||||.||.|||||.|.|||||||||
Sbjct 3404 GCATGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCTATGTTGGCCAGGCTGGT 3477
Query 196 CTTGAACTCCTGACCTCAAGTGATC--CACCACCTCGGCCTCCCAAAGTGTTGAGA------------------ 249
||.|||||||||||||| |||||| | ||.||||.|||||||||||||.||.||
Sbjct 3478 CTCGAACTCCTGACCTC--GTGATCTGC-CCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAGC 3548
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3549 ACGCCCGGCCTAAATCAGGATTCTTAACAATTAAAGTGTATCTGAATGAGGAAGGAAACGCTTGTCATTCTCTA 3622
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3623 GTCTTACCCAATTAATACTGACACCTTTTGAAATTAAAACCTGATTTTTTAGTTGTTGGAGCCAGTAGGAAAAA 3696
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3697 TGGCTGATTTGAACTTTTTTCCTATAAATGAAGTAGTGCTTGCATGTGTGTACTCTAATGCACTTTAGTCTATG 3770
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3771 ATCTAAATGTCCTTTTATGCTATTATCTTCTGCATGCAAACTTTACATACATCAGCATGAATATCCAACATTCA 3844
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3845 CTGAACACAGTGCCACCAGCACTTGTAATTGCCTTTTCAGAAATAATGCTTTCTCATAATTGTTTATAACGAGC 3918
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3919 ATCAAACTATCCCCACAAAATGATCAAGTTCACCAAACTAGACAAAGAATCTGTTGTATCATTTTAACATCATA 3992
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3993 GAAGAACATTTAAGACATGTTTGTAAGTTGTAAATAATGACTCCAGTTATAGCATATATATCTAAGACGTTAGA 4066
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4067 GACCAGTTATTTTCTAGAGTGAAACTGTCTATTGATGATTGAGAAAATTGAATTCTTTGGTTTTTACATGTGGG 4140
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4141 CAAATGTTACATAGGGGTATAATCTGTTTAAATAAGCTTTATTTATGCCAAGGATTTTTTTTTTAATATCAAGA 4214
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4215 CTTGGTTAGACCAAAGTTTGCTCTTGCAGGAATGCCATTTATCAGCTTCTGAATGCCCTTCTAACTCCATTACC 4288
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4289 CTCAAGAGTGTCTGGGTATAGGATGAAGCATTACAAAAAGAAAGCACCACTGCAGTCATGCCTAGTGTCTGGGA 4362
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4363 GAAACAAAATGGACTAGACCTGCAGTTTAAAATAATTTAACCCGAGAAACTCTTCAAATGAATTGTTTCCTAAA 4436
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4437 GATGCTCAAATTTAAGGGATAAACTCTAAAATCAGAGCTGCTGTGGTTAAAGTCCCCCACAAACCTTTCCCCAG 4510
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4511 ACACCTCTGCAGAACTCAGGTGCACAATGTTGAAAACCATGGAATTAGACAACTTCCTGAATTCCCTTTGAGCC 4584
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4585 TTGCAGCCTCATTTCGTTACTCCTGTTACTCACGGTGCTTATAAGCAGGTAACCATATGGTCTCTTAGTGAAGC 4658
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4659 AAATCACATCCTTAGCACATGATGTTCCTTCTATGGGTATCAGATCTTAAGACTTTTTAAAATTTAGGAACAAA 4732
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4733 TGTTTCAATATTATATTTTCAGTAATGCAATCAAAATAAGCATAGTTACTGTTTTCTGTACGGCTAAGTACTGC 4806
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4807 CTAATGGATGAAAGAAGTTTGGTGCTTCAATTATTTATGAGCTCAGAACTCAATTCATTAAAGTTATTTTGCCA 4880
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4881 AGTCATGCCAAGATATATTGAAATTTCCACTCATATTGGTTTTTAAAATTTTTTTTAGTCCTAAAATTAATAAG 4954
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4955 TATGGAAAATCACTAAAAGCAGTGTAGGATAAGGTGTGTTTAACTGGCCGGGCACGGTGGCTCATGCCTGTAAT 5028
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5029 CCTAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTAAGGCCAGGTGTTCGAGACCATCCTGGCCAACATGGT 5102
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5103 GAAACCCCGTCTCTAGTAAAAATACAAAAAATAGCTGGGCATGATGGTGGGTGCCTGTAATCCCAGGTACTCGG 5176
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5177 GAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGGCCGAGATCGCACCACTGCACTCC 5250
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5251 AGCCTGGGTGACAGAGCGAGACTCCATCAAAAAAAAAAAAAAAAAAAAAAAAGATGTGTTTAACTGGGAAGGGT 5324
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5325 GATAATAATAGAATAATAGGTACAGGAGGACCAAACTTTAGATTATAAACCAGAAAGTTTTGTTATTTTATATA 5398
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5399 AGTGTATCAGTATTACTATTTATCATTTATATAGCATTTTATATTTGCAAAGTGTTTAATAATTTTTGTTATTC 5472
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5473 TTTACATATATATGAAATAGGACAGTTATCCCACATGAACGGTAAATAAATTGAGGCACAGAACAGTAAAAAAA 5546
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5547 CCTCAGGGTCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTTA 5620
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5621 GGTCAAGAGTTGGAGACCAGCCTGGGGCAATATAGTGAAACCCCTTCTCTACTAAAAATACAAAAATTAGCCAG 5694
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5695 GCATGGTGGTGGGCACCTGTAATCCCAGCTACTCTGGGGGCTGAGACAGGAGAATTGCTTGAACTCAGGAGGCG 5768
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5769 GAGGTTGCAGTGAGCCAAGATCACGCTACTGCACTCCAGGCTGGGTGACAGAGCGAGACTCCACCTCAAAAAAA 5842
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5843 AAAAAAAAAAAAAAAAAAAGAACCTAAGACAACCCAGTGAAATGGTAGCAAAAAATAGGAAATATAATGATCAC 5916
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5917 ATTTTCTGAATCCTAGACCATCAGCCTAATTCACTGAGGTGTGTTGTGTATCACTCTATTTTATAGATGATTTT 5990
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5991 ATATAAGTAACAGTGGATTGTTTTAAAGCTGACGTCATTGTATGTGGATACATTCTATATGGAATAAATGTTAT 6064
Query 250 -------- 249
Sbjct 6065 GTAAAGGA 6072