Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_111983.2
Aligned Length:
3071
Identities:
213
Gaps:
2828

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTCATCTCTGTTCTGCTTTAGGAGTAAAGTTTACCCTGCAGTTCCTTCTGTGGTGAAGTTTTCTCTTTCTCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGAGACCAGATTCTGCCTTTCTGCTGGAGGGAAGTGTTTTCACAGGTTCTCCTCCTTTTATCTTTTGTGTTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTTTCAAGCCCTGCTGAATTTGCTAGTCAACTCAACAGGAAGTGAGGCCATGGAGGGAGGCAGAAGAGCCAGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGTTATTGAAAGTAAAAGAAACTTCTTCCTGGGAGCCTTTCCCACCCCCTTCCCTGCTGAGCACGTGGAGTTA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCAGGTTAGGGGACTCGGAGACTGCGATGGTGCCAGGAAAGGGTGGAGCGGATTATATTCTCCTGCCTTTTAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAAGATGGACTTCAGCAGAAATCTTTATGATATTGGGGAACAACTGGACAGTGAAGATCTGGCCTCCCTCAAGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCCTGAGCCTGGACTACATTCCGCAAAGGAAGCAAGAACCCATCAAGGATGCCTTGATGTTATTCCAGAGACTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAGGAAAAGAGAATGTTGGAGGAAAGCAATCTGTCCTTCCTGAAGGAGCTGCTCTTCCGAATTAATAGACTGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTGCTGATTACCTACCTAAACACTAGAAAGGAGGAGATGGAAAGGGAACTTCAGACACCAGGCAGGGCTCAAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTTCTGCCTACAGGGTCATGCTCTATCAGATTTCAGAAGAAGTGAGCAGATCAGAATTGAGGTCTTTTAAGTTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTTGCAAGAGGAAATCTCCAAATGCAAACTGGATGATGACATGAACCTGCTGGATATTTTCATAGAGATGGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAGAGGGTCATCCTGGGAGAAGGAAAGTTGGACATCCTGAAAAGAGTCTGTGCCCAAATCAACAAGAGCCTGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGAAGATAATCAACGACTATGAAGAATTCAGCAAAGAGAGAAGCAGCAGCCTTGAAGGAAGTCCTGATGAATTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCAAATGGGGAGGAGTTGTGTGGGGTAATGACAATCTCGGACTCTCCAAGAGAACAGGATAGTGAATCACAGAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTGGACAAAGTTTACCAAATGAAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCACAATTTTGCAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAGCACGGGAGAAAGTGCCCAAACTTCACAGCATTAGGGACAGGAATGGAACACACTTGGATGCAGGTACAGTA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GAACCCAAAAGAGAAAAGTAAAATATTTCTTATGCCTATTTTTTTTTAAATCAAAAGGGAGAGAACAAAAGCTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TACCAAAAGGGCCATGTTTCAAGAAAATGGATTTAAACATATTTCCCTGTGGAGGGGCTTTGACCACGACCTTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GAAGAGCTTCATTTTGAGATCAAGCCCCACGATGACTGCACAGTAGAGCAAATCTATGAGATTTTGAAAATCTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCAACTCATGGACCACAGTAACATGGACTGCTTCATCTGCTGTATCCTCTCCCATGGAGACAAGGGCATCATCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATGGCACTGATGGACAGGAGGCCCCCATCTATGAGCTGACATCTCAGTTCACTGGTTTGAAGTGCCCTTCCCTT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GCTGGAAAACCCAAAGTGTTTTTTATTCAGGCTTGTCAGGGGGATAACTACCAGAAAGGTATACCTGTTGAGAC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGATTCAGAGGAGCAACCCTATTTAGAAATGGATTTATCATCACCTCAAACGAGATATATCCCGGATGAGGCTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ACTTTCTGCTGGGGATGGCCACTGTGAATAACTGTGTTTCCTACCGAAACCCTGCAGAGGGAACCTGGTACATC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGTCACTTTGCCAGAGCCTGAGAGAGCGATGTCCTCGAGGCGATGATATTCTCACCATCCTGACTGAAGTGAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTATGAAGTAAGCAACAAGGATGACAAGAAAAACATGGGGAAACAGATGCCTCAGCCTACTTTCACACTAAGAA  1924

Query    1  --------------------------------------------------------------------ATGGAG  6
                                                                                |..||.
Sbjct 1925  AAAAACTTGTCTTCCCTTCTGATTGATGGTGCTATTTTGTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGAA  1998

Query    7  TCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAA  80
            |||||||||||.||||||||||||||||||||||.||||||||||||||.||||.|||.|||||||.||||||.
Sbjct 1999  TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACCGCAAGCTCCGCCTCCCGGGTTCAG  2072

Query   81  GCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATG----CACCACCACGCCCGGCTAATTTT  150
            ||.|||||.||||||||||||||.||||||||||||||    |||.|    |.|||||||.||.||||||||||
Sbjct 2073  GCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACT----ACAGGGGCCCGCCACCACACCTGGCTAATTTT  2142

Query  151  ------GTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGA  218
                  .|||||||.||.|||||.||||||..|..||||||.||||.|||||||||.|||||||||||  ||||
Sbjct 2143  TTAAAAATATTTTTAGTAGAGACAGGGTTTCACTGTGTTAGCCAGGGTGGTCTTGATCTCCTGACCTC--GTGA  2214

Query  219  TCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA------------------------------------------  249
            |||| |||||||||||||||||||||.||.||                                          
Sbjct 2215  TCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCGATGGTACTATTTA  2288

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2289  GATATAACACTATGTTTATTTACTAATTTTCTAGATTTTCTACTTTATTAATTGTTTTGCACTTTTTTATAAGA  2362

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2363  GCTAAAGTTAAATAGGATATTAACAACAATAACACTGTCTCCTTTCTCTTATGCTTAAGGCTTTGGGAATGTTT  2436

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2437  TTAGCTGGTGGCAATAAATACCAGACACGTACAAAATCCAGCTATGAATATAGAGGGCTTATGATTCAGATTGT  2510

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2511  TATCTATCAACTATAAGCCCACTGTTAATATTCTATTAACTTTAATTCTCTTTCAAAGCTAAATTCCACACTAC  2584

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2585  CACATTAAAAAAATTAGAAAGTAGCCACGTATGGTGGCTCATGTCTATAATCCCAGCACTTTGGGAGGTTGAGG  2658

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2659  TGGGAGGATTGCTTGAACCCAAGAGGTCAAGGCTGCAGTGAGCCATGTTCACACCGCTGCACTCAAGCTTGGGT  2732

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2733  GACAGAACAAGACCCCGTCTCAAAAAAAATTTTTTTTTTAATAAAACAAAATTTGTTTGAAATCTTTTAAAAAT  2806

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2807  TCAAATGATTTTTACAAGTTTTAAATAAGCTCTCCCCAAACTTGCTTTATGCCTTCTTATTGCTTTTATGATAT  2880

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2881  ATATATGCTTGGCTAACTATATTTGCTTTTTGCTAACAATGCTCTGGGGTCTTTTTATGCATTTGCATTTGCTC  2954

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2955  TTTCATCTCTGCTTGGATTATTTTAAATCATTAGGAATTAAGTTATCTTTAAAATTTAAGTATCTTTTTTCAAA  3028

Query  250  -------------------------------------  249
                                                 
Sbjct 3029  AACATTTTTTAATAGAATAAAATATAATTTGATCTTA  3065

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