Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001737159.2
Aligned Length:
4212
Identities:
217
Gaps:
3969

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGCCACCCTGGGGAAGGTGGATGCCGGAAGAGGCGTCGCCTGCGGGTCACCCAGAGGACACCCGGCGGGGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCCGAGGGTGGGAGTGAGGAGAGGTAGGAGAGGCCACGGCAGAGGGAGGCCCCGCGCAGAGTGGGAACCATCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCGGTGCGGGCCTGAACTTCCAGGGCCGGCTACTCCTCGGCAGAGCGACCGCGCGGTGTCTCAGAGCGCGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGAGCCGCACTAAGAGCGCTGGACGGCGGGAGAGAGGCTCGGAGGACCGGTAGCTCCCAGCAAAGCGGCCCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGGATGTCGGGAGCTATCTTCGGGCCCCTGGAGGGCCCGAGCTCCCTGGATGCCCCGAGCATCCACCCGCTGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGCCCGCTGTGCCACGTGCAGTACGAGCGCCCGTGTCTTCTGGACTGTTTCCACGACTTCTGTGCCGGCTGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCGTGGCCGCGCGACCGACGGCCGCCTCACCTGCCCGCTGTGCCAGACGTGGAGACCACGTACTTCTGCAACA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGTGCGGACAGCCCCTATGCGCGCGCTGCCGCGACGAGACGCACCGAGCACGCATGTTCGCGCGCCACGACATC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTGGCCCTGGGTCAGCGAAGCCGCGACGTGCCCCAGAAGTGCACGCTGCACGCAGAGCCCTACCTCTTGTTCTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CACCGACAAGAAGTTGCTGTTGTGCATCCGCTGCTTCCGCGACATGCAGAAGGAGAGCCGGGCACACTGCGTGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACCTGGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAGCAGGCGGTGCTGGCCGTGAAGGCCCTGCAGACG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCACGCGGGAGGCCATCGCGCTGCTGCAGGCCATGGTGGAGGAGGTGCGGCACAGCGCCGCCGAGGAGGAGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CGCTATCCACGCCCTCTTCGGCAGCATGCAGGACAGGCTGGCAGAGAGGAAAGCGCTGCTGCTGCAGGCTGTGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGAGCCAATACGAAGAGAAGGACAAGGCCTTCAAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCACCCTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGGTCCACCTGGTCATCTGCTCCTCCTTCCTCAGCTTGGCCAACAAGGCTGAGTTCCTGGACCTGGGCTATGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTGATGGAGAGGCTGCAGGGCATCGTCACGCGGCCGCACCACCTAAGGCCTATTCAGAGCAGCAAGATTGCCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTGACCACCGAGCTGAATTCGCGCGCTGTCTGGAGCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCAAGTGGTGCTAACACGCTGGCAGGGGGCTTAGGCCCCAAGGCGCTGACGGGGCCCCACTGCCCCTCCCCAGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGGAAAGATGTCGGGGTCACCCGTCCAAAAGCCCACGCTGCACCGGTCCATCAGCACCAAGGTGCTGCTGGCGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGGGCGAGAACACGCCCTTCGCAGAGCACTGCCGCCACTATGAGGACTCCTACCGGCACCTGCAGGCAGAGATG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGAGCCTAAAGGACCAGGTACAGGAGCTGCACCGAGACCTCACCAAGCACCACTCGCTCATCAAGGCGGAGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CATGGGAGACGTCCTGCACAAGTCCCTGCAACTGGACGTGCAGATCGCCTCGGAGCACGCCTCCTTAGAGGGCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGAGGGTCGTCTTCCAGGAGGTAGCCCTCCCAAGGACTCTAACTCCAGCCCCACCTGTCAGGGGATACCTGGGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TACCCTAAGACACTTTTCTCTTTCAGATTTGGGAGGAAGCCTATCAGCGAGTGGCTAATGAGCAGGAGATTTAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAAGGTTCCAGACAGTTGGCTGCCGAGTGAACCCTCTGTCCCTGAGCTAACCCACATACTAGCAGAGGAGGAAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCAGAGTCGGCCACTAACCAGATGCAAATCCCCACACTCTTCCCCTTAGCGCTTGACCGTGCCTCCCAGCTGCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AACTGGCCTCAAATGATGCATGTGAGCCCAGCTCCATGACCTTCTCCAGCTGAGGCAGGAGAATGCCTACCTGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCACCATCACCAAGCAGATCACGCCCTACGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CAGGCACCCGTGGATGAGCAGTCAGAGAGTCTACAGAACACGCACGACGACAGCAGGAACAACGCGGCCTCAGC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAGGAATAATCCAGGAAGTGTCCCGGAAAAGAGAGAGAAGACATCAGAGCCTAAAGGAAACAGCTGGGCTCCGA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACGGCCTCTCAGAAGAGCCTCTACTGAAAAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCCACATGGAGGGAACACCCGACTTAGCAAATGGGACCGGTCCCCAGGGTCAGGCTCTTAGAGCAGGCACAAGA  2368

Query    1  -----------------------------------------------------------ATGGAGTCTCGCTCT  15
                                                                       |||||||.|||||||
Sbjct 2369  CTGGGACACTGGACAGAAGGTTGTTCCCATGATGGTTTTTTTTATTTTTTATTTTTGAGATGGAGTTTCGCTCT  2442

Query   16  GTTGCCCAGGCTGGAGTGCAGTGGCCTG--ATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTC  87
            ||||||||||||||||||.|.|||  ||  ||||||||||||||||||||||||||||..||||||||||||||
Sbjct 2443  GTTGCCCAGGCTGGAGTGTAATGG--TGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTC  2514

Query   88  TTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCAC----CACCACGCCCGGCTAA--TTTTGTATT  155
            |.||||||||||||||.||||||||||||.|    |||.||.|    ||||||||||.|||||  |||||||||
Sbjct 2515  TCCTGCCTCAGCCTCCCGAGTAGCTGGGATT----ACAGGCGCCTGACACCACGCCCCGCTAATTTTTTGTATT  2584

Query  156  TTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC-ACCT  228
            |||.||.||||.|||||||..|||||||.|.|||||||||||..|||.||.|||||||.|||||||||| .|||
Sbjct 2585  TTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACGCCAGACCTCAGGTGATCCACCTGCCT  2658

Query  229  CGGCCTCCCAAAGTGTTGAGA-----------------------------------------------------  249
            |.|||||||||||||.|||||                                                     
Sbjct 2659  CAGCCTCCCAAAGTGCTGAGATTACAGGGGTGAGTCACCGCGCCTGGCCAATGTTGTTGTTGTTTTTAAGACAG  2732

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2733  AATTTCACTCTTTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCTGGCTCACCGCAACCTCCGCCTCCCAGG  2806

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2807  TTCAAGCGATTCTCCTACCTCAGCCCCCAGAGTAGCTGGGATTACAGGCATGTACCATCACACCCGGCTAATTT  2880

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2881  TTTGTATTTTAAGTAGAGAGGGGGTTTCTCCATGTTGGTCAGGCTGGCCTCGAACTCCCAACCTCAGGTGATCC  2954

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2955  GCCCACCTCGGCCTCCCAAAATGCTGGGATTACAGGGGTAAGCCACTGTGCCCGGCCGGTTATTTCTTTAAAAG  3028

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3029  GTAATCATTTGTCAAGAGTAAAACCCAGAAGCTCTGACAGGCCATAATTTCAGATCCTTTGGCTTGGGCAGTTT  3102

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3103  TGATTTTCCCCGTGTTTGCATGGCATGAAGTCTTCGTCCTTGTCACAGTAGCTTGGGATGACTCCCAGTCCACA  3176

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3177  TGGAAAACATCAGGGAGTGACAATCCAGCAAGAAATCCCTCGCTAGTTCCACACCTACGCACCGAGCGTCGGTG  3250

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3251  TGCCAGGCCCTGTGCTGGGCAGAGTGTGGTATGTCAGGGTGTGCCGGTTTTAGGTAACAAGACTCCACCACTGA  3324

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3325  GTGGCACCTGCCCTATTGCAAAGGAATCCAGTTCCTCCGGAATAACAGTCCCACTGTTAACCTGGTGCTACTGG  3398

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3399  GAAGTTCCACACAGTAATCTGAGCAGTGACTCATGGAAGGATGAGGAACGTTTGCTCCAGCTTCTCTCCCTTTC  3472

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3473  CAGCAAGGGCAGAGCTCCTAAAGCCAGGGGTTAGCACCTGGCCAGCTTATGTGGCAGATGGTCTCAGTTACAAC  3546

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3547  TTCGCTGCTTTCCCAAACTCCTGCAGCCCTCCTGAGTCCGACTTCCGTTGATAGCAAGGCACTGGGTGGCAGCA  3620

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3621  ACCTTTTTTCTAGTAGTTTTTTCCCAGCAGTTTTCCATTTCTCCACAGTATCCTTTTCATTTAGAGGAGCTTAA  3694

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3695  TAAATGCTTTTTAAAAAGTAACCCACGTGACGTAAAATTTTACAAGTTTTTGTGGCAAAATGATGCCCAGATAG  3768

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3769  TCACATTTAAGCAAATATTCAGCTTGATTCAGTGATTAACAGCAAATGGGTCTACGTGCTAACATGGCAGCACA  3842

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3843  TTCAACACATAACACATCACTCACATTGACGTCCACTGTCCCTGCACCTGCTACTTCAGGGGCACTGAGGCTCC  3916

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3917  TGTTCCAAGGCCTTACAAACCTATGTGGTGGCCTGCAGGGCAAAAGGAATTATCATTACAACTGGTTAGAGGTA  3990

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3991  GGAATTCAGAAAGAAATTGAGGAGGCCAAACACACGTCGTTTGAGGCTAAAGGCTTAAGACGCTTCTTACCCAA  4064

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4065  GAGTGACCTCAGAGTTTCACATCCCAGACAATCACACTGTGGTTGAGTGAAATCAAGTGCAGTTTTATTTAAGA  4138

Query  250  --------------------------------------------------------------------  249
                                                                                
Sbjct 4139  ACTGGAAAGAATAATCAGTATCTGTGAAAGAAAATCCAATTTAGAATATTTAAATAAACATTTATGTA  4206

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