Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001743050.2
Aligned Length:
3785
Identities:
215
Gaps:
3539

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CACTCCACCCTGGGCAACAAAGCGATACCTTGTCTCCAAAAAAAAAAAAAAAAGTTAAAATATGTACACTTACT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGCACTACTACGATTGAGGCCCTGGGGGTACCACAGAGTATCAGAGTAGTCCTGCCTGCCTGCAGCTTCCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCCACAGGGAGAGGATTGAGGATAGATTATAAACAGAAGATGAGAGGGACCAGAAGAGCAGGCTGTAACTTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACCAGAGTGGCCAGGGAAGACCCTCACTGAAAAGGGGCATCGAGCAGACAGATATAAAGAAGGCAAAGAAGCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCACAGGACTGGCTGGGGAAAGCATGCTCCAGCTCTCCCCGAAGGTCCTCTGAGGAGGAGAAACAAAGCAAGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGTGCATGAGCGACACGGGAGATTATATGGCAAGGTCACCAGCTCTTTATATCCCAACTGACTCATTCATTCCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAGAGACTCCTAAGGCCAAGAGTGAACGTGCAGGCACAGGGCCAAGCATGGGGAGCGGGGGGCAGGGGGCCCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCCAAGCATTCTAGCTCTACCCAAGTGGCTCTGAGCTGAGCTCCCCTGCACAGCTCTCTTCCTAACCCCAGTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCCAGCAGTACCCCTCTACCCCATCTGTGCCCATGAGAAGCGGCATGCCCTGCGGGGGCCTGACTAGATTTGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CACCACAGCCCCTACACCAATCTGGCCATGGCACAGCCAGCTCCTATTTTCACACACAGCTTCTGGAAAGCACA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCAGGGACCCCTGAGCTACCAGGAACCCTCCACCACCACCGCACTATGTGGCCCAGCTTGGCGCCCAGGCCCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TACCTTTGAACTTCTTCAGCATCCCTTTTAAGACAAAGGTCTTGAGAGAAACATTCCAGACTTTATTCTTCATC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCAGAAGAGACTGTGGTTGGCTTGGGGCCAGGCACATTGCTACACCTGCAGGACAAGGGCTCTGAGAAGGGCCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTGTGCACCATTTTGCTCCCACAGGCTGTGACAATTAGGATGGCGAGGTCCTCTTGGCAGAAAGAGGTAGAAAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGGAGAGCCAGACCTCATGCAGAAAAACCCATGGCCAGGCAGGTGGGCGTTTGTCTCGGAAGGTCCCCAGGCAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCAAGTCGGGGGATCAGGAGGTGAGAGGTCAGGGGACAGGGAATAAAGACAAGGCTCAGTGAAAAGGGAAGAAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CAACTTAGAGAGGCCCCAGGAGCTGTGAGGTCACTCACCTGCTCAGCGTGCTTTTGAATTCCTGGAAGGAAAGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TAGAGGAAACCAAATCAGCATCAGGTAACCTCCATTCACCTCTGAGAAACAAAGCTTGCCCCTTGCTGTGCCTC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCAGATGTAAGCATAAGCAAGTGTGCCACGCCTCACTGCCTGCGTGGGCCTCAGGGGCAGCAGCTTCCAGTGGC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGCTGGCTGCAGGGTGTCTCACCCACGCAGTGGACCTCTCACCCTTTGCCACAACTCTTCACGTGCTTTCTTTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TATCTTTGCTGCTTTCTTAGTTACAGAATCATCACTGGAGCTATCCCATGGGACCCAGTGCTGCGTGTGTCCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAACCACCTGAGGGAGGTCACAGCCCTTATGCACCTACTGCTCACTCAGCCCCATAATGACTGTTCTTAACCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATCTATGGATTGTGAAGTTTATCTAGTTGTTTATAACTTTTTTTTTAGCGAAATAGAATAGAAAACATCAAAGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GCATACGTGTAGCAAAGGTGAGTATTATTTTCTGAGACTTTTGTCTCAAGCTTGTGATTCTGAAATACGATATA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATTATTGTGGCTCATAGTCAAGAAAGTTTTCACATCTCTCTAGACCTCCAACCCCAGGAAAATCAGGGCACTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTCTCCAGTCCCCTTCAGCTCCAGATCATGTGATTCTCCTAGACCCCCCAGGACTGACACTGTTCTCTAGCTGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGGTCCTGATGCCTTAGGATAAATGACTCGAGCCCCTGGCTGAGCCAGACTTACCTGGAGAAAGTCAAGGTCAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCTTTTGAGCTGTCTCCTGGATCTGGCTGCTGAGCTTGGACAGCTGGGTGATCTCAACCCCGAGCTGGGCCAGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTCTCATTCTGCTTCTGTGCCACCTCCCGGGACAGTTCCTCCAGGCGGCCTAGCAGCCGACCCTCCTGCTCCAC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAGGAAAGCCCTCAGTGCCTGGAACTCTGCCCCCACCTTCTCCTGCTCCGCTGCCATCTGTTTCTGTCCCAGGA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GGAGAAGTTGGAGAGGGACTTGAACATGGAGACATAACATTTGGCCAGTGGCCTGAGTCATCCCACAGGGCAAG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GCTTCGTCCCTGTCACTGCTGGAGGATCGGAGACACACCCACCTACGCACGCAGTGCGTGCTCTATTGTCAGTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TCCCAGCTCTGAACAAGCTGTAGTCTGGACACATGCTCTTTTCTCCCCTGCCACAGATGCACCCACACATGTCT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GTGGACCTGTGCTCCATCACCTAAACCAAGGCAGCTTCATACTCCCCCCAGAACTACGCCAAGCTGCAGCTTCC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TCACTTGAAAAGCAGAAGGGATAAATTAGTGCCTCCTGGGGCAACCATAGGATTAAACTGAGATTGCTTTTTCT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCCTCAAGCACATTTATTTCATCACCCTCAAACTTTTACACTTCACTTTCTTTTTAAAGGCCATCTTTCCTGTT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TAGCAGTTATAATGCTAACACATGCTCAAAATACAAAACTTGGGAGATGTAGGAAAGTAGAAAGAAGGAAGAAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGTCCGATGCCAGTGACCAGAGGTAGCAGCACACCCCCAAGGAACGAAGTGAGAATATGCGGCATGCAAGTGTC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATATTCTGTTCTTTCCATTAACAGCATACACCGGATTTTTTACTCGAGTTTTCAGATGCAGACTCATGCCCTGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCTCTTGATTTTTTATGTGAACACACGTTTGGCACTCAATATGTCCCACCAGGAAGTTCCTCTTCCTTAAAACT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CCTGGGCGGAGGAAGGGAGTCCTGTGAAGTTGGGAGACCTGGGTTCAAGGTGTCCTACAATGCCCCCACCTTTC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CTTCAGCTTCCAGGCAGGCTGCAGTAGCCTGGAGCGCCTTATGGATATTAACTCCCTCAACCCTGACGGCAGCC  3108

Query    1  ------------------------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTG  38
                                                .||||||||||||||||..|||||||||||||||||||
Sbjct 3109  CAGTGGGGAGGGTGCACTTCCCTTCAAGTCTTACAGGTGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAGTG  3182

Query   39  GCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCT  112
            ||..||||||||||||||||||.|||||||||||.||||||..|.|||||.||||||||||||||.||||||||
Sbjct 3183  GCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCGGAGTAGCT  3256

Query  113  GGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGAC-GGGGTTTTGCCATGTTAG  185
            |||||||.||.|...|.||||||||||||||| |||||||||||||.||.||||| |||||||..||.||||.|
Sbjct 3257  GGGACTACAGGCGCCCGCCACCACGCCCGGCT-ATTTTGTATTTTTAGTAGAGACAGGGGTTTCACCGTGTTTG  3329

Query  186  TCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCAAAGTGTTGAGA---------  249
            .||||..||||||||.|||||||||||  ||||||| .|||||||||||||||||||||.||.||         
Sbjct 3330  CCAGGACGGTCTTGATCTCCTGACCTC--GTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCG  3401

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3402  TGAGCCACCCTGCCAGGCCTCATGTTTGCTTATCTTAACCAAAATGAGCCCTCGTTTCACTTTCCTGTTCTACC  3475

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3476  CTAAGGAAGATAAAATATCATTCCAACTTGGGGTAGAGGCAGGTGCCAGTACCCAAGACCCTGGGCTGTGCAGC  3549

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3550  AGGGGCTACTGTAAACCCAAGACCCTAAACTTCCTCCCTCTGCCAGAGCCAGGGAGCAGCTCTGACGCCCTCTA  3623

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3624  GCCCCTTCTCCGTTAGCCTCGATTTCAAATAAAAACACTGTGAACATGAAATTTTTTTCACTACTGTTTTGTTG  3697

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3698  ACAAAACATGCCATGAGGCTCTTTATTGTATTAATATTCCCACTTATTGAATATCCATGTTTCTCTGCAGAAAT  3771

Query  250  -----------  249
                       
Sbjct 3772  AGTAATGTGTT  3782

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