Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001755381.2
Aligned Length:
5131
Identities:
217
Gaps:
4883

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTGATCGCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGATTCGTGTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCCGCGCGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCCCAGCTTTCACAGCCATCGCTGACTGGGAGCAGGAGACCCCTCCCCACTCTACTTCCACTGCCTGAGCTGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCATGCCTCACAGCCCAGTAAGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCCTGTGAGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACTTCCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTGGTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATCTGGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CACAGCTGGGCAGGAGAAGTTCAAGTGCATCGCATCTGCCTACTACCGGGGTGCCCAGGTGATCATCACGGCCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAGGGAGAACGAGGCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGCGAGAACGTGAAGGCATTCTTCAGCCGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTGCCCGGCTCCAGGTCGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGGCCCTCCAGCCTGGGCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAATTTCCGTGACTGTGGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTCCAGTCCCTCCACCCAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAAAGGCCCCCACTGGCTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCCAGTCCATTTGCAGGGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGTCTATACTACTCGGCCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCAGGATCCGTCACAGTGT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCCCCCTGGGAGTTTTCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGCCACGGATGCTCAAGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTCTGGCTGAAGGGCTATC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCAGAACAACCACTCAGGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACAGCTGTCCTAGGGTAAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGTGCCCACTGCTGCCTCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCACCTTTAGAGGACTTCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGAGCAGACAGAAATACCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTATGAACCAGCCCCACAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCTTCCCGTAGATGGCGAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGCTGCCCTGTAAATGTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCATTCCCCCTTCAACATAT  2368

Query    1  -------------------------------------------ATGGAGTCTCGCTC-TGTTGCCCAGGCTGGA  30
                                                       |||||||.||.|.| ||||||||||||||||
Sbjct 2369  TTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTTGTTGCCCAGGCTGGA  2442

Query   31  GTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCA  104
            |||||.||||.|.|||||||||||.||||||||||||||||||||||.||||||||||.||||||||||||||.
Sbjct 2443  GTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTCCCAGGTTGAAGCGATTCTCCTGCCTCAGCCTCCC  2516

Query  105  GAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGACGGGGTTTTGCC  178
            .|||||||||||.||.||.||||||||||||.|||.||||||||||||||||||.||.||||.|||||||..||
Sbjct 2517  AAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCC  2590

Query  179  ATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC--ACCACCTCGGCCTCCCAAAGTGTTGAGA-  249
            |||||.|||||||||.|||.|.||||||||.||||.|||| ||  .|||||||||||||||.|||||.||.|| 
Sbjct 2591  ATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGA-CCTGCCCACCTCGGCCTCCCGAAGTGCTGGGAT  2663

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2664  TACAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTTTTCTTTTGGGCGGCGGGATG  2737

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2738  GAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAGCTTCCCCTTCCGGGTTCATG  2811

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2812  CCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCATGCCGGGCTAATTTTTTATA  2885

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2886  TTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGACCTCGTGATCTGCCCGCCTC  2959

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2960  GGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATAAATGACTTTTAAAGGGGTTG  3033

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3034  TATGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGCCCCCCCCCCGCCACATTAGC  3107

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3108  TGCGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAGATGGACAGAGAGCAGGAAAG  3181

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3182  ACTGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGCCTGCACAGCTAGTGTTGATG  3255

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3256  GCTTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAGCCTGCCTTCCTAGGGAGCTG  3329

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3330  GCGCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGCCCAGTTTTCATGTGGATGGA  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  TTGTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTTTTAGCTCTTGCCAATGGTGC  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  TGCAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCCCGACTGCGGCCCCCAGCCTG  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  GTCCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAGACCAGGTTTGCTGGGCATAA  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  GCTTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCCCTTCCCTTGCCCCTTCGGGC  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  CTCCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTGAGCTAGAGCTGTACTGCCTC  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  ACGTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACCTCCTGCAATGTGCCAGCTGA  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  TTCCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGCCTGGGAGGACAGAAGAGTAA  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  GGTCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCAGCATCTTCTCGGTCAGAATT  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  GCTTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCTTCTTTCCCAGCATCGGGCAG  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  TAAGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCAAGCAGCCCCCTGCAGCCAAG  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  GTGCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCCTCTTCCCTGTTTCCCTGGAC  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  CCTTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGCTGGAGACACGTACCTGAAGC  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  AGGTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTCGCTCTGGCTTTCGAGGCTCC  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  TCACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCTGGTCACAATGCAGTCTGCAG  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  ATGCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAGGCCTCTGTGGACACCCCCAC  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  AGCTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTCCCCCACCCATCTGTGGAACC  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  CCAAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTGGGAGGAAGGGCCCACAGTAG  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  GTGCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAGACCATGTTCCCAGCAGACAG  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  ATTGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACAATCCTGTGCTTGGCTCTCCT  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  TGGTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTCTGACCCAGAGACCCTCACAG  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  GGCATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGAAGAGCTTGGTAGGAGCCAGC  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  CACAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCCAGCTAGAGAGGCTCTGGGCA  5031

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5032  CAGGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGTAACAAATCACTCCAAAACTT  5105

Query  250  -------------------------  249
                                     
Sbjct 5106  CATTGCTTAAAGCAACAAGCATGTA  5130

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