Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001755386.1
Aligned Length:
5073
Identities:
217
Gaps:
4825

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCTCCAGGGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATCGCCGGTGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCGTGTAGCCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGCGGAGCCCCAGCTTTCACAGCCATCGCTGACTGGGAGCAGGAGACCCCTCCCCACTCTACTTCCACTGCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGCTGTGCCATGCCTCACAGCCCAGTAAGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGTGAGCCGCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACTTCCACGGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGGTGGTTGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTACAAGGCCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTGATCATCACGGCCTTTGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGGGAGAACGAGGCAGGCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGCGAGAACGTGAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCATTCTTCAGCCGCGTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCCGGCTCCAGGTCGGCAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCCTCCAGCCTGGGCTGCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTCCGTGACTGTGGTGTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGTCCCTCCACCCACCCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGGCCCCCACTGGCTGCCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGTCCATTTGCAGGGTCATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTATACTACTCGGCCATGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGATCCGTCACAGTGTTCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCCTGGGAGTTTTCTGTTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACGGATGCTCAAGGTTCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGGCTGAAGGGCTATCTCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GAACAACCACTCAGGCCTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GCTGTCCTAGGGTAACTCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCCCACTGCTGCCTCTCCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCTTTAGAGGACTTCAGAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCAGACAGAAATACCCCACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGAACCAGCCCCACAGCCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TCCCGTAGATGGCGAGCACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGCCCTGTAAATGTTCAGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCAT  2294

Query    1  -----------------------------------------------------------ATGGAGTCTCGCTC-  14
                                                                       |||||||.||.|.| 
Sbjct 2295  TCCCCCTTCAACATATTTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCT  2368

Query   15  TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCT  88
            |||||||||||||||||||||.||||.|.|||||||||||.||||||||||||||||||||||.||||||||||
Sbjct 2369  TGTTGCCCAGGCTGGAGTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTCCCAGGTTGAAGCGATTCT  2442

Query   89  TCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTC  162
            .||||||||||||||..|||||||||||.||.||.||||||||||||.|||.||||||||||||||||||.||.
Sbjct 2443  CCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATTTTGTATTTTTAGTA  2516

Query  163  GAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC--ACCACCTCGGCCT  234
            ||||.|||||||..|||||||.|||||||||.|||.|.||||||||.||||.|||| ||  .||||||||||||
Sbjct 2517  GAGATGGGGTTTCTCCATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGA-CCTGCCCACCTCGGCCT  2589

Query  235  CCCAAAGTGTTGAGA-----------------------------------------------------------  249
            |||.|||||.||.||                                                           
Sbjct 2590  CCCGAAGTGCTGGGATTACAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTTTTCT  2663

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2664  TTTGGGCGGCGGGATGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAGCTTC  2737

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2738  CCCTTCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCATGCC  2811

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2812  GGGCTAATTTTTTATATTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGACCTC  2885

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2886  GTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATAAATG  2959

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2960  ACTTTTAAAGGGGTTGTATGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGCCCCC  3033

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3034  CCCCCGCCACATTAGCTGCGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAGATGG  3107

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3108  ACAGAGAGCAGGAAAGACTGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGCCTGC  3181

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3182  ACAGCTAGTGTTGATGGCTTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAGCCTG  3255

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3256  CCTTCCTAGGGAGCTGGCGCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGCCCAG  3329

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3330  TTTTCATGTGGATGGATTGTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTTTTAG  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  CTCTTGCCAATGGTGCTGCAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCCCGAC  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  TGCGGCCCCCAGCCTGGTCCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAGACCA  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  GGTTTGCTGGGCATAAGCTTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCCCTTC  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  CCTTGCCCCTTCGGGCCTCCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTGAGCT  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  AGAGCTGTACTGCCTCACGTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACCTCCT  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  GCAATGTGCCAGCTGATTCCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGCCTGG  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  GAGGACAGAAGAGTAAGGTCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCAGCAT  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  CTTCTCGGTCAGAATTGCTTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCTTCTT  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  TCCCAGCATCGGGCAGTAAGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCAAGCA  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  GCCCCCTGCAGCCAAGGTGCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCCTCTT  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  CCCTGTTTCCCTGGACCCTTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGCTGGA  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  GACACGTACCTGAAGCAGGTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTCGCTC  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  TGGCTTTCGAGGCTCCTCACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCTGGTC  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  ACAATGCAGTCTGCAGATGCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAGGCCT  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  CTGTGGACACCCCCACAGCTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTCCCCC  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  ACCCATCTGTGGAACCCCAAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTGGGAG  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  GAAGGGCCCACAGTAGGTGCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAGACCA  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  TGTTCCCAGCAGACAGATTGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACAATCC  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  TGTGCTTGGCTCTCCTTGGTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTCTGAC  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  CCAGAGACCCTCACAGGGCATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGAAGAG  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  CTTGGTAGGAGCCAGCCACAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCCAGCT  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  AGAGAGGCTCTGGGCACAGGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGTAACA  5031

Query  250  -----------------------------------------  249
                                                     
Sbjct 5032  AATCACTCCAAAACTTCATTGCTTAAAGCAACAAGCATGTA  5072

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