Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001755387.1
Aligned Length:
5087
Identities:
217
Gaps:
4839

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CAGGGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTGATCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGTGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGATTCGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TAGCCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCCGCGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGCCCCAGCTTTCACAGCCATCGCTGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCCTGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGCCGCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCCACGGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGGTTGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAAGGCCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATCATCACGGCCTTTGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGAGAACGAGGCAGGCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGTCAGGGGCCGCATGTG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGCAGGCCGAAGCAGACGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTACTGGTCAGTGTCGGCCAAGACT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCGAGAACGTGAAGGCATTCTTCAGCCGCGTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GAGGCAGAGCAGTGCCCGGCTCCAGGTCGGCAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGGAGAGCAAGAGGCCCTCCAGCCTGGGCTGCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CACACGGACAGGAATTTCCGTGACTGTGGTGTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTAGGCCCATGTTCCAGTCCCTCCACCCACCCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTGGGCACTAGAAAAGGCCCCCACTGGCTGCCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCCCATAAAAGGCCAGTCCATTTGCAGGGTCATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ACTCCTGCGTCGGTCTATACTACTCGGCCATGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGGATGTGTCCCCAGGATCCGTCACAGTGTTCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCACCTGCCATTCCCCCTGGGAGTTTTCTGTTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACTGTCCTTCTGCCACGGATGCTCAAGGTTCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCTTAGACCTGTTCTGGCTGAAGGGCTATCTCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GGCCAGGATGTGCAGAACAACCACTCAGGCCTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGGCAGACTGCACAGCTGTCCTAGGGTAACTCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CATGCTGGGCCTGTGCCCACTGCTGCCTCTCCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATGGTGTCCATGCACCTTTAGAGGACTTCAGAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCTGCACATGCAGAGCAGACAGAAATACCCCACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTTTCTCACTGCTATGAACCAGCCCCACAGCCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTCGTGCTGTTGCTTCCCGTAGATGGCGAGCACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGCACACTGCAGCTGCCCTGTAAATGTTCAGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCAT  2294

Query    1  -------------------------------------------------------------------------A  1
                                                                                     |
Sbjct 2295  CTTTTTCTATTCATTCCCCCTTCAACATATTTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGA  2368

Query    2  TGGAGTCTCGCTC-TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAG  74
            ||||||.||.|.| |||||||||||||||||||||.||||.|.|||||||||||.|||||||||||||||||||
Sbjct 2369  TGGAGTTTCACCCTTGTTGCCCAGGCTGGAGTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTCCCAG  2442

Query   75  GTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATT  148
            |||.||||||||||.||||||||||||||..|||||||||||.||.||.||||||||||||.|||.||||||||
Sbjct 2443  GTTGAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATT  2516

Query  149  TTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-  221
            ||||||||||.||.||||.|||||||..|||||||.|||||||||.|||.|.||||||||.||||.|||| || 
Sbjct 2517  TTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGA-CCT  2589

Query  222  -ACCACCTCGGCCTCCCAAAGTGTTGAGA---------------------------------------------  249
             .|||||||||||||||.|||||.||.||                                             
Sbjct 2590  GCCCACCTCGGCCTCCCGAAGTGCTGGGATTACAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCA  2663

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2664  TTTTTATGTTTTCTTTTGGGCGGCGGGATGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGC  2737

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2738  TCACTGCAAGCTTCCCCTTCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCA  2811

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2812  CGTGTGACCATGCCGGGCTAATTTTTTATATTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTC  2885

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2886  GATGATCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCC  2959

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2960  GGCCTCCATAAATGACTTTTAAAGGGGTTGTATGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACA  3033

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3034  AGGTGAAAGCCCCCCCCCCGCCACATTAGCTGCGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAA  3107

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3108  GGACACACAGATGGACAGAGAGCAGGAAAGACTGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCT  3181

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3182  GTGCCTTTGCCTGCACAGCTAGTGTTGATGGCTTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATAC  3255

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3256  TGCCTGGCAGCCTGCCTTCCTAGGGAGCTGGCGCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCT  3329

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3330  GTAGCAGCGCCCAGTTTTCATGTGGATGGATTGTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTG  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  TGTCCAGCTTTTAGCTCTTGCCAATGGTGCTGCAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAG  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  GCCCTTCTCCCGACTGCGGCCCCCAGCCTGGTCCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTC  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  CATTAGGAAGACCAGGTTTGCTGGGCATAAGCTTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCT  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  CCACAGCTCCCTTCCCTTGCCCCTTCGGGCCTCCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTA  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  CCAGCTTCTGAGCTAGAGCTGTACTGCCTCACGTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCC  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  TCATATTACCTCCTGCAATGTGCCAGCTGATTCCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTT  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  GATATTTGGCCTGGGAGGACAGAAGAGTAAGGTCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCA  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  AGTTGATGCAGCATCTTCTCGGTCAGAATTGCTTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAA  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  GACATTTCCTTCTTTCCCAGCATCGGGCAGTAAGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTG  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  GGCCCAGGCAAGCAGCCCCCTGCAGCCAAGGTGCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAAC  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  GCCTTTTTCCTCTTCCCTGTTTCCCTGGACCCTTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTG  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  TCTCTTCTGCTGGAGACACGTACCTGAAGCAGGTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCA  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  GGGTGCTCTCGCTCTGGCTTTCGAGGCTCCTCACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAG  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  TTTCATCCCTGGTCACAATGCAGTCTGCAGATGCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTAC  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  TCCCAGAGAGGCCTCTGTGGACACCCCCACAGCTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCT  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  GGGCTTTCTCCCCCACCCATCTGTGGAACCCCAAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCT  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  AGCACCTCTGGGAGGAAGGGCCCACAGTAGGTGCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTG  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  CTCAAACAAGACCATGTTCCCAGCAGACAGATTGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGC  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  CTGGGGAACAATCCTGTGCTTGGCTCTCCTTGGTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCC  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  CAGTCCTGTCTGACCCAGAGACCCTCACAGGGCATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCT  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  GATCTTGGGAAGAGCTTGGTAGGAGCCAGCCACAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGAC  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  ACTTCATGCCAGCTAGAGAGGCTCTGGGCACAGGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTT  5031

Query  250  -------------------------------------------------------  249
                                                                   
Sbjct 5032  AGTACTATGTAACAAATCACTCCAAAACTTCATTGCTTAAAGCAACAAGCATGTA  5086

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