Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_002956449.1
- Aligned Length:
- 4074
- Identities:
- 215
- Gaps:
- 3829
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACTGCGTTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCATGCCGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCAGCAAAACGACCACTGAAAACAACGCCGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTGTAGGCCTCTAATTGAGGCCTGGCCTCTGCTGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGTGAATTTCTGTACTGGAAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGAGCCCAGGTGCCCAGAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGCAAATCGCAGTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTCTCCAGGCTGACAAGGCGAAGGGCATGGCTTCGAAGTGCAAAAGAGTCATCATGAAACATCATGAATCATGA 814
Query 1 ---------------------------------------------------ATGGAGTCTCGCTCTGTTGCCCA 23
|..||||||||||||||||||||
Sbjct 815 ATCATTAGGCGTCTTCCCTTCGCTCCCCACTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTGCCCA 888
Query 24 GGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCA 97
|||||||||.||||||...|||||.|||||||||||||||||||||||..|||||||||||||||.|||||..|
Sbjct 889 GGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCGTA 962
Query 98 GCCTCCAGAGTAGCTGGGACTATAGACATG----CACCACCACGCCCGGCTAATTT-------------TGTAT 154
||||||.||||||||||||.| |||.| |.|||||||.||.||||||||| |.|||
Sbjct 963 GCCTCCTGAGTAGCTGGGATT----ACAGGTCCCCGCCACCACACCTGGCTAATTTTCTTATTTATTTATTTAT 1032
Query 155 TTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC-ACC 227
||||.||.||||.||||||||||||||||.|.|||||||||||.|||||||||||||||||||||||||| .|.
Sbjct 1033 TTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCTGCT 1106
Query 228 TCGGCCTCCCAAAGTGTTGAGA---------------------------------------------------- 249
|.||||||||||||||.||.||
Sbjct 1107 TTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCATTGCACCCAACTCACTCCCCACCTTAAAACCAAAAG 1180
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1181 CGCTCTGGCTCTCAATGGAGACATCAAGCCCTCCCTGCCCCTTCTCCCTCCCCTTTCAGAGAATCTCCAGGAAT 1254
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1255 TTCTGCCATTGTGCAGGGAGCAATTGAAAAATCAGTTAGTTCAGCTGGGTGCAGTGGCTCATGTCTGTAATCCC 1328
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1329 AGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAGCACAGTGAA 1402
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1403 ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGATGGGCACCTGTAATCCCAGCTACTCTGGA 1476
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1477 GGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGACTGCAGCATTGCACTCCA 1550
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1551 GCCTGCGCAACAAGAGTGAAACTGTCTCAAAAAACAAAACAAAACAAAACACAAAAAGAAAGAAAAAAGGAAAA 1624
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1625 ATCAGTTAGTTCGATTATTAGAAGACTAGATTATTGCTCAGCAGTAACCACTCCTTTCCCACAAACTCCCCTCT 1698
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1699 CTAGGAGGAATGTACCTCCCCACCCATTCCTGTTAGGCTTGGCCAGGTGAATCGCTTTGGCCAATAGAATGTAA 1772
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1773 CTGACAAGGTGAGCAGAGATTTGCAGTGGGCTTGTGCTTGGTGCTGGTCCTCCGGGGCTCCTGCCTTTAGCCAG 1846
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1847 GGGAAGCACACTCCCCAGCCCCTCCTTAGCCCTCTGGCCCTGGGGAGAATGAGAGGCATGTGGCACAGTCCTGG 1920
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1921 ACCCAGCCGTGGCTGGGAGCAAGCCTGGAAGCTTGAGCGAGAGATAAATGCTTGGTCTTTTTGTTTGAGACTAA 1994
Query 250 -------------------------------------------------------------------------- 249
Sbjct 1995 GTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGTGGCACAATCTCAGCTCATTGCAACCTCCACCTCCCAGGTT 2068
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2069 CAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGCCAAATTGGAAGACCCACTTCTCTGGACT 2142
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2143 GGATGCTGCATTGAATTGAGCAAAGGAACTGAGTGCCCGGGGAGCTCAAAGGGAAGCAGCCCAGCCTTCCTTCC 2216
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2217 GGGGCAGAGCAGTGGTGGGGACCTGTTTCCAGCTGCTTGTGCCCCCCACTTCATGGAGGAGGGACCAGGGATCC 2290
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2291 TCAGAGGAGAGGGTGATGTTTGACAGTGGCTGCCTGCCCTGAAAATCGCCCTTGTCTGTCCAGCCTGGCCTGAA 2364
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2365 TTTCACCCACATCAACCCACATGGGATACTTTATTTATTTATTTATCTATTTATTTATTTATTTATTTATTTTA 2438
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2439 GAGCCAGGGTCTCACCCTGTGGCCCAGGCTGGAGTGCCGTGGTGCTATCATAGCTCACTGCAGCCTCAAACTCC 2512
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2513 TGGGCTCAAGTGATCCTCCCGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGAACACACCACTGTGCCTGGCTT 2586
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2587 ATTTTTCTTTTTTTTTTTGGTAGAGATGGGGGTCTCTCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCA 2660
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2661 AGTGATCCTCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGAATCGGCTCCCAGACACCTGCCACTCGTGAA 2734
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2735 TGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATGACATGGATCCTGCGGACAAACC 2808
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2809 GCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCCTTCTCGGATGACGTCCTTCA 2882
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2883 GCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTACAGGGACTGATGGAGAATGAAA 2956
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2957 GCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCCCCACGTCTGGGCCCTCACCTGG 3030
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3031 CCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCATGTCCTAGCTGCCCTCCCTGTG 3104
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3105 GCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGTGGGGTTCCGAAGGCCCCTTT 3178
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3179 ATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGGCACTCATCGTTTCGTTCCAA 3252
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3253 CCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGAGGCTCGCTCTGAGCCCAGGC 3326
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3327 TGGAGTTCAGTGATGGATCTCAGCTCACTGCAGCCGCCACCTCCTGGGCTCAAGAGATCCTCCTGCCTCGGCCT 3400
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3401 CCCAAGTAGCTGGGATTACAGACGTGCACCACCAGGCCCAGCTAATTTATTTTTTAGTTTTTAATTTGCTGGTA 3474
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3475 AGATGGTTTGTAGCTTTGTTGCCTAGGCTGGTCTTGAACTCCTGGCTTCAAGCGATCCTCCAGTCTTGACCTCC 3548
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3549 CAAAGTGCTGGGATTATAGGCGTAGGCTACAGCCAACTTTCAATACTGCCCCATTGGGGGTTACGTTTCCAACA 3622
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3623 CATGAAATTAGGAGGATACATTCAAACCACAGCAGTATATTATGACCATAATATTCATTAACTGTGTAACAGGC 3696
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3697 TGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACCAGAGTGGGTAGATCACTCGAGGTCAGGAG 3770
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3771 TTTGAGACCAGCCTGGCCCACATGATGAAACCGCCTCTCTACTAAAAATACAAAAAATTAGCCGGTGTGGTGGC 3844
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3845 AGGCGCCTGTAACCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGTGGAGGTGGCAG 3918
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3919 TGAGCCTGATTGCACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAATAAACAAACAAACAA 3992
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3993 ACAAAACCTGTATAACAGAGTGTCATTGAATTTCTAAACGTTGAAAGACTTCACATTAAAAAAAAACTCACAAT 4066
Query 250 ---- 249
Sbjct 4067 TTAA 4070