Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_002959036.1
Aligned Length:
2517
Identities:
205
Gaps:
2285

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGAAGTGGAGTGCGCTGCGGTGCGAGCTGGGCCGGCGGGGTGGTTCGAGAGCGCGCAGAGTCCAGACTGGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGGCCCGAGGGGCCGACCCGCAGCGTCCCTGGTCTCTCCAGCCCTCACTCGGAACCGCACGGTACAGACAGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACAATACCCTCCCCTCCCTTGGGCTGGACCCCTCTCTACAGCTAGGAGCCAATGGCAGAAGACAAAACCAAAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGAGTGAGTTGGACCAAGGGAAGTATGATGCTGATGACAACGTGAAGATCATCTGCCTGGGAGACAGCGCAGTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCAAATCCAAACTCATGGAGAGATTTCTCATGGATGGCTTTCAGCCACAGCAGCTGTCCACGTACGCCCTGAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCTGTACAAGCACACAGCCACGGTAGATGGCAAGACCATCCTTGTGGACTTTTGGGACACGGCAGGCCAGGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGTTCCAGAGCATGCATGCCTCCTACTACCACAAGGCCCATGCCTGCATCATGGTGTTTGATATACAGAGGAAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTCACCTATAGGAACCTGAGCACCTGGTATACAGAGCTTCGGGAGTTCAGGCCAGAGATCCCATGCATCGTGGT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGCCAATAAAATTGATGGTGGGGCCATCCCTGCACCTGGGTGTTAGCAATTCACTGGGGACCTGCCCTCATACA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTTCCTCCTCCATTCCCCGGGCAGGCAACCTTCAGTGATTGGTCCTCCCTCCCACGATAAGATACAACCCTTGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGGTTGCTTGCATTCTTCCCACCTTATAAAGAAGCCAGCTAAGCCGACCTGCCCTCTTTCCAAGACACAGATC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTATTAACTGAGCTCTTTCTAGGACATGTTTCCCAATCATCCCTGCCTATCCCACTTTCTGGAATGAAGGCCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCAGTGGCCCCCCCTCCAAACCTTCTTCCCTTCCCTTGACAGACCAATGTCCTACCTTCTCTCTACAGCAGACA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TAAACGTGACCCAAAAAAGCTTCAATTTTGCCAAGAAGTTCTCCCTGCCCCTGTATTTCGTCTCGGCTGCTGAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGTACCAATGTTGTGAAGCTCTTCAATGATGCAATTCGATTAGCTGTGTCTTACAAACAGAACTCCCAGGACTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CATGGATGAGATTTTTCAGGAGCTCGAGAACTTCAGCTTGGAGCAGGAAGAGGAGGACGTGCCAGACCAGGAAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGAGCAGCAGCATCGAGACCCCATCAGAGGAGGTGGCCTCTCCCCACAGCTGAGGGGCTGGGGCTAGGGGTGGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTGAATGGAGAAACTCTCTAGGCCATCCCC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACATTCAAGGCCCGTGATACAGGGATGAGGTCAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACCAGATCTCCTTGAAGCAGAATTAGGGATCAGCATCAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TAACACCTTCCCCACCCCCTCCCCCCAGGCAGACAGTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TACAGGAAATTTAGGTGTTTTTTGGTGTTTTTGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGGGCTTCTCCTGAGGTAATGATTACCCCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTT  1702

Query    1  --------------------------------------------------------------------ATGGAG  6
                                                                                |.||||
Sbjct 1703  TTCTCCCATCTTTTTTCCTCTTCAATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAG  1776

Query    7  TCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGC-CTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCA  79
            |||||||||||.| |||||||||||||||||||| |.| |||||||||.||||||||||||.|||||.||||||
Sbjct 1777  TCTCGCTCTGTCG-CCAGGCTGGAGTGCAGTGGCGCAG-TCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCA  1848

Query   80  AGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGT  152
            |.|||||||.||||||||||||||.||||.||||             |||.||||||||||.||||| ||||||
Sbjct 1849  AACGATTCTCCTGCCTCAGCCTCCCGAGTGGCTG-------------GCATCACCACGCCCAGCTAATTTTTGT  1909

Query  153  ATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCA  225
            ||||||.||.||||||||||||..|||||||...||||.||||||.||.|||||.|||||  ||||||| .||.
Sbjct 1910  ATTTTTAGTAGAGACGGGGTTTCACCATGTTGCCCAGGATGGTCTCGATCTCCTCACCTC--GTGATCCGCCCG  1981

Query  226  CCTCGGCCTCCCAAAGTGTTGAGA--------------------------------------------------  249
            ||||||||||||||||||.||.||                                                  
Sbjct 1982  CCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAA  2055

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2056  TCGTTTTTGAGCAGATAGCTATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAA  2129

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2130  GCTGAGATCACAGGAACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTT  2203

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2204  ACAGCCATACCACAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAG  2277

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2278  AGGCTGTCCTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAG  2351

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2352  CTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCAT  2425

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2426  TGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGACATAA  2499

Query  250  -  249
             
Sbjct 2500  A  2500

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.