Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_002959456.1
- Aligned Length:
- 6440
- Identities:
- 216
- Gaps:
- 6196
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AACTACGTCTCCCAGTATCTCCAACGATCTCCTTAACCAATCCTCATAAAAATAAAGTTTTGATCGCCTTACCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTCAGATTACTGTCTTCTGCTCACCAGTTTGTTTACAATAAAATGCTTTCTTTGTGGGTCAAACACAGAGTAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAATGAGAAAAGGGTATGTAAATAGGCAACGGAAAAAAGCACCAAGGCTCTGGACAGCTATATGCAAGTCAAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGTAACGGGGAGCTTAAGTCTCCAATTGAAACTTGATCTCTGTAACTTACTCCATTGCAAATGTCACTACGTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATCTACCTATGCAATGGTTTGCGCGTATGAAACCTGCTCCGCAGATCCATCCATTCTTTCTTGAATGTACAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAACAGACTGAGCACATAACCTCGAAAGGGTATAAGTAGGCTCTCAGTATAAAGGTATCTCCAGGGCGTCTTTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGGTCTTCGCCGAACCCAAAAGTTCTCTGGGTGTTTTGAATGAACACCCTTGGATCGGACCCAGAAATGACCCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCTCAAACCTAATTTCGGGTTTCATTCTAAGGCGAATGGAGCTCGGCCACGTCCAGAAACACTTCTGTAGCAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TAGGCTGCCCGATCAGGGGGGTTTGCCTTACTGTTCAATGGCACAGGGGCCCATCCCACCCCGGCCCCCTGCGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCAAGAACTGGGGCTGGACGACCTCACACGGCCAAGAATGGGAGGCACAGAAAAAAGACCACGACAGCCTCCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGCCTTGACTTCCTGCTTACAGCCCCAGAAGGCTTCAGTCCACTCTTCACAGCCAGCCAGGAGCATGATCAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACCAACAGGAGCACGACTTTCTCCTCCAGGATGGTGGGACTGTCTTCATGTGGCTGGAGTGTGGCTCTGGCGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCACACTCCAGCCATCCTGAACCCCTGAAGCTCCCAGAGTGGCCACGTGGCCATGTACCTTTTCACTGCCCTTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTACCTGCTCGTGTCTCTGTCGTCAAGGCTCGCTCCCCTACACTCCAGGCTAACACCACTTGTTTTGAGTCTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGCGGCACCTCCTCCAGGAAGCCTTTCTTGGCCCAGCCCACCATGGGTTCCCTTAAAGCCTTTACCCTACCCAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTGGCATCACATCTCCTTGCCCCAGTCCCAACTAGACAAGGAACTACTCAAGAGCAACGCCACATCTTGAGTAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTCATCTCATTGTCCGCTAGAGTAACTAGCACAGTATTGGGCACGTAATAGGTGCTCAATAAACGTTTCTCAGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGATCGGATGAACACCCGGTCATTTAGTTATTGGCACAGGGCTAGAACTCAGACCTACGGTTCTGAAACCCCCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCCTGTCCAAGACTCTAAAATGAGCTCTATTTTTTAGGACATAGTGAAATCACGGAAAAAATTCTTAGGATGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTCGGTTTAGAAACAACCTCCCTCCAGAGTTGAGTGACACAAAACTTCTCAAAGCCCAATCGAGGTCAGCTGTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCTCACACAGGTATCGGCTGGGCTGGGGGCCGTGTCAGGGTGAAGGAAATCGTGGCGGTGCCTGGCCCTGGGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TAGGCGCTCTCTTTCCCGGCGAGGCCACCGTGGTTTCCGAGCTGCCCAGAGCATCTCCCCGCGGCGCCCGCTAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGGCGCAAGGCCTTCTAGGAGGCGGGCGCTCCGGAGGAAGCTGTGACCGCCCCTAGCGCACCGCGCATCCTGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGGCATTCAAATCCCCGGGTTTTAGAAGGGCTCCGTTCTCCCGTCAAGACTCGAGCTCGACTGCCTCTTGGGCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCACGGAGATAAGGTGGAAAAGGCAGGCCCGTGGAGCCTGGGAGCCCGGGAATCAAATCTCTGCTCTGCCACTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGCAGCGCAGCGCTGTGGCCGCGGGCGTCCCTCGAGCCCAGCCTCTCCCGCCAAAGGGAAAGGGATGGCTGGAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCACCTACCTGGCAGGGCCGCCGGGACACGCAGCGCAGCGCTCCGCTCAATACACCACAGATTTTACGGCTACT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAGCACGAGGCTGGTGGCTGTTTCACGTACAACACACGAGCCACACGTTTTTAGAGTAAATACATTTATTCATG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGAGCAGAGATGCGAAACGCAGCCGGGTGACACGGGCCTCCCATGGGTGGGTGCTTGGTCAGAGGGAAACGCCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CACCAAGGCTGGAATTGGTCTGGGTGGACTGAGGCACGAAAGGATCGGTAAGGAACTAGGTTCTCTTCCAAGGA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGGTGTCCGGGAGGGCGCATATTTTGGGCAATTGGAAGGCTGCCCTGCACAAGCCGACTGCTGGACGCTGCTGT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTTGCCCTTGCCCAAGGGTCTGGGATGACCAGCAAGCTCTGGGTGTCTGGGGAGGCAACTGCCGCAGGAATCAC 2368
Query 1 ----------------------------------------------------------ATGGAGTCTCGCTCTG 16
|.||||||||||||||
Sbjct 2369 AATGAATCCCCAAGACAGGCCTCTCACCTGTTTCCCCTGTTTTTTGTTTGTTTTTGATACGGAGTCTCGCTCTG 2442
Query 17 TTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTC 90
|.||||||||||||||||||||||...||||.||||||||||||||||||||||||.|.|||||||||||| ||
Sbjct 2443 TCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGCGATTC-TC 2515
Query 91 TGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACC---ACCACGCCCGGCTAATTTT-GTATTTTTGG 160
|||||||||||||..||||||||||||||.|| .||| || |.||||||||||||||||| ||||||||.|
Sbjct 2516 TGCCTCAGCCTCCCAAGTAGCTGGGACTACAG--GTGC-CCGCTATCACGCCCGGCTAATTTTGGTATTTTTAG 2586
Query 161 TCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCAC--CTCGGC 232
|.||||.|||||||...|||.||.|.||.||||||.|||||||||||||||||.|||||||||| | ||.|||
Sbjct 2587 TAGAGATGGGGTTTCATCATCTTGGCCAAGCTGGTGTTGAACTCCTGACCTCAGGTGATCCACC-CGTCTTGGC 2659
Query 233 CTCCCAAAGTGTTGAGA--------------------------------------------------------- 249
|||||||||||.||.||
Sbjct 2660 CTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCGCGCGAGGCCTCCCCTGTTCTTGAGGGGTGCTGTCCAAT 2733
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2734 ACAGTAGCCACCAGCCATAAGTGCTATTGAGCAGCTGCAATGTGGCTAGTGCAACTGAGGAAATGCATTCTAAA 2807
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2808 CTTTAACTTTAATTAATTGAAATTTAAAAATAGATAGAAATTCCATAACTGCAAAACCTTTCAGTATTTCTGAA 2881
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2882 ACAATTTGAGGATGTGAATGTTTACGACTGTACATTTAATTAAATCTAAATACAGATCAAGTTTTTCTGATGAA 2955
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2956 AATGTAGTATCTGAATTGGGCTCTAAGTGTAAACTCATGGGATTCAAAGACAATATGCAAAACAGAATGCAGAA 3029
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3030 TGTCTCGATAATTTACAGTTGAAATGATATTTTAGATATATTGGGCTAAATGAAATGTATGCTTAAAATTAATT 3103
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3104 TTATCTATTTCTTTTTACTTTTTTCTAATGTGGCCACCATAGAAAGCTACCTATGTGCCTGCGTTAGATTCCTC 3177
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3178 TTAGACAGGGCTGGCTTAGACCCTCTCCTGGGCCTTCTTCCCTCTGACCTCCCATTCAGGCCTGGCCCTTTGGC 3251
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3252 TTTGCTTCAAGGTTTTGTCCGCTCTTTGGAGCTGCCATGTGCTGGGTCAGACCAGAACCGGGGGCAGAGGCTAA 3325
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3326 AGGTGAGACCCACTCCCTCCTGTCCCAGAGCAAGGGGCTGGGGGCGGGGGTTGCCCTGGCAGCCAGGAGTTCTG 3399
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3400 GAGCCGGTGATATACCTGGGACAGTGGTGGTCAGGGTGAGCTTAGGCTGGGGTTATGGTAATGGTTCAGGACAA 3473
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3474 CACCCTTCTTTGAGATATTGTTAACTGGTGAGGAAGAGGAGGAGCTCAGGGCTACAAGACACAGACTAAGTTTC 3547
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3548 TGTAACCACGACTCAAAATCAGGCTTGGTCACAGGACTAAGCGAGGCACCTAATTACTCTAAGTGCAGATGAGG 3621
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3622 ACAGCAACTTAAGTGCAATTACTCTAAGTGCAGATGAGGACAGCAAATTCAGAGACCCTCAAGCCTTCCTTGAG 3695
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3696 GGTCTCTGAATTTCACTGGTCAAAGAACAGGCAGTCCCCGGTCTGCATTTGTGGCAGGAGCCCCAGCTGGGGCT 3769
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3770 GGGGAGCCCAGGAAGGACACCAGAGAGGGTTCTCACCCTTGCCAAAACCACAGCCCCACAGTGGCTTCAGCACC 3843
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3844 CAGCCCCGGTTTGGACCTGAGCTACCCCACATCCTGGCCCCCACTACAGTGTGAACCATGGCATGTCCCAGGAG 3917
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3918 GGCCGTCTCTGCCTCCAGTCCCAATTAGGCAGCCCCAATATAAGGGATCCAGAGGGCTCTGGCTCAGACCAAAG 3991
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3992 GCATCTGAAGGGTCCATGTGGGATCCTGGCTATCCACCCTCTCCCTTGCACCTCATTTTTTCCTGAGCTCCAAG 4065
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4066 GTTACACAAGTGGCAGGCTGCCCAGGCCAAATTCCACGTCTGTCCCAATCCTCGATCCACTAACACACAAAACC 4139
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4140 AGGTCAGAAGCGGTTATGCAGCCCTTGGGTACAAACAGCCAGCTTCCTGCACTCACTCACTGGGCTGGCTGTGT 4213
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4214 TTGCCATACAAACAGGACAAAGTCCAGGCCTCCTGACCCCAGGGAATAAAGCCTGCAGCTTTGCTTTGCTACAC 4287
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4288 TTTAAAGTACAGGCTGCTTTCAAGTTAACCAGGCAGTCCTTCGTCTTCTCCAGCAAGGCTGAATCCACAGTTCT 4361
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4362 CTGCTAGGGTAAGGGGGGCTCGTTCAGTTCAAAGGTTTGGGGACTCAGCTCCTGGCCCCTTTGCAGGGTTGCCT 4435
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4436 TAAGTTTTGGGTTTGACAACCCAGGGACTCTTGTGCACTAAGGTTTGGAGACAAACACTAGGAGAGGAGAAAAA 4509
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4510 GTGTGACCCAAATAGTAGAAAGAATTCTCTGAGACTCAGTTAAGGTTATTTTAGCTCTGGTTAAACATGCATGT 4583
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4584 GCGTGCTCACACGCTCACACACACACCATTGTATCCTAAGCTGAATGCTGTCTTTTCAAAAATCTGGCCATTGG 4657
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4658 CTCATGCCTGTCACCTCAACACTTTGGGAGGCCGAGGTGGGAGGATCACTTGAGCCCAGGAGTTTGAAACCAGC 4731
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4732 CCGAGCAACATAGTGAGACCCTGTCTCTACAAAAATTTAAAAATCATTTTTTAAATATATACTTATGCTTTCTC 4805
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4806 GCTACAGGTTTTTTAATCCCAGCTGGTACGGCAGGGGAGATGTCACCCAGGGCAGAGGCTGGGAGGCTTTCAGG 4879
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4880 CCACAGATTTCCACCATTTGCCAAGCTTCCCTGCTCTCCAGGGTCTCTCTGCAAGGAGCCCCTTAGGAGAATGA 4953
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4954 AGAAGATCCATTTTGTTTTCTATAAGATATCAACGAGGTACTTCTTGGTTTTATTAGATATGAGAATTATCAAT 5027
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5028 TCAAGTCAGAAGTGCCACAACCACTGCCATATTAGAAAGATTAGTACCCGAGAGCCCAGACTGTCACCCGGCTG 5101
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5102 GAGGCCTCTCGCCGATGGCTCCCAGGGACCACTGACCTAATCAAGGGCCTCCTCCTTCACACGCCACCCTCCAC 5175
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5176 CCCAACCCCTTTATGCCTTCTTAAAGTCCTTCAGGGAGGGGACCCACCATCAAGATTGTCCTTTCTGGCACCTA 5249
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5250 ACTCTTCTGTCTGCTAGAAGACAGCAATGAGACTGTCCCTACAACGATGATGCTTATGGTGGCCACATCTCAAA 5323
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5324 GAAGCTGAGAGGGATCTCAGCCCCGTATTGTCACTTGGGAGGCAGAACCCAAATCTTAGTAAATGAAGACTTTC 5397
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5398 TCTCTTGAACCATTCACAGGAATACTGAAGGTAATGAAAAAATAATGTGTAAACCATCCTTTGGAGCAGAGGCT 5471
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5472 ACAAACTCACATGCCCGCCTGGACCAGCACCGGGCAGACGTCTTACATGAGTGAAGTGCAGTGGGGGATGGGAA 5545
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5546 GGGCGGGGGAGGGGGTAAAGGTGGTGGGGGTGAGCCGCAGCAGACTTGAGATGACAGCATGCCCCATCCTCCAC 5619
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5620 CCAGAAAACTAGGTATTTTTTATACGTAATCTCCCAAGTTTCAAATATTGGCAATACATACAAAAGGTTATGAA 5693
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5694 GCCTTATAACTTCTGCCTTAGGCAAATTCCAAACTTAAACAAAGCTCCCTCTCCCACTAAATAAGAAAACTTTA 5767
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5768 ATAAGATGATTACAAAGAAATTAATAAAGAAATAGAAAATGATAGCAGCTTCAAAAATACCAGTCTCCCTGTTT 5841
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5842 TAAAACAAAATCAATAAAATCAGTGAATCACAATTCATTGAACTCATTCTTGGCTACAAGGAAGCAGCTGGATA 5915
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5916 GATCCACTGGCAGGCAGCCCTGCAGGATTAAAATGAGGCCCACTGCCAAAAAGCCCCAAATGAGATGCCGTCCT 5989
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5990 CCTCATCCTCACACCATCCTCATCAGGCAGGGAAGGAATAGGATTAGACTCCCTATTATGGAGAATAGGTTGAG 6063
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6064 GCACAGAGCAGGAAGGGCCCCTTCTTAATATCATAGAGCCCCTCTGTTGGGTCAGACCAGAACTGGGGGCAGAG 6137
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6138 GCTAAAGGTGAGACCCACTGCTGTCCAGGAGCAAGGGGCTGGGGGTAGGGGCTACCCTGGCAGCCGGGAGTTCT 6211
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6212 GGAGCCAGTGATCTAGAGCCCCCCAGCAAAACAGGTTTCCCATTGCACCATTTGGCACTATCCTGGAGAGAGCT 6285
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6286 GAAATAACAAATCAAAGTTAGGCAGCACCTTGCAGGGCACCGAGCAAATAGTAGGCGCAGTTGTGTGTCTGCTG 6359
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6360 CGTAAACTGTGCATCATGAATGAAGGGAGCTACTTCCCTCAGCTAGTGCCTCCCCTCCAGGGAAATCCAGGAGC 6433
Query 250 -- 249
Sbjct 6434 TG 6435