Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_430193.3
Aligned Length:
5292
Identities:
220
Gaps:
5044

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAACACAGAGCAGCCTGGCAGTGTCCAAGCAACAAGCCTCCGCTCCTCCTTCCTGCACCCTGGGGCTCCTGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTCACATGAGAAGGAGGGCTGTCTGAGATTCGAGGGAAACAAGCTCTCAGGACTTCCGGTCGCCATGATGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGGGCGGTAAACGCGGTTAGTGCAAGCATCTGGGCCATCTTCAATGGTAAAAAAGATACAGTAAAGACATAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TACCACATTTGACAAATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGACAGTGGATCCAGTAGGAACATAGATGCATCCAAACTCATTAGACTACAAGGATCACGGAAACTGTTGGTTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACAATAGCATACGGGAACTGCAATACACAAAAACTGGAATTTTTTTTCAGGCTGAGGCCTGTGTGACAAATGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACGGTATACAGGGAGCTACCCTGTGTTTCTGAGACCCTTTGTGACATCTCACATTTTTTCCAAGAAGATGATGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACAGAGGCAGAGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGTGTAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAGAAGAGCAGGAATCTTCAGAGGGACAAGATTCAGGAGACATTTGCTCAGAAGAGAATCAAATAGTTTCCTCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TATGCTTCTAAAGTCTGTTTTGAGATCGAAGAAGATTATAAAAATCGTCAGTTTCTGGGGCCTGAAGGAAATGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGATGTTGAGTTGATTGATAAGAGCACAAACAGATACAGCGTTTGGTTCCCCACTGCTGGCTGGTATCTGTGGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAGCCACAGGCCTCGGCTTCCTGGTAAGGGATGAGGTCACAGTGACGATTGCGTTTGGTTCCTGGAGTCAGCAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGGCCCTGGACCTGCAGCACCATGAACAGTGGCTGGTGGGCGGCCCCTTGTTTGATGTCACTGCAGAGCCAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAGGCTGTCGCCGAAATCCACCTCCCCCACTTCATCTCCCTCCAAGCAGGTGAGGTGGACGTCTCCTGGTTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCGTTGCCCATTTTAAGAATGAAGGGATGGTCCTGGAGCATCCAGCCCGGGTGGAGCCTTTCTATGCTGTCCTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GAAAGCCCCAGCTTCTCTCTGATGGGCATCCTGCTGCGGATCGCCAGTGGGACTCGCCTCTCCATCCCCATCAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTCCAACACATTGATCTATTATCACCCCCACCCCGAAGATATTAAGTTCCACTTGTACCTTGTCCCCAGCGACG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTTGCTAACAAAGACACTATTTTAGAGGCTGAGGATACATCAGTGAACAAAAGAGGCAAAAACATGACAACCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAGATATTACATGGAATGCTATAGGAAAAATATATGTGCATATGATAAGAACTATAACAAATAAAGAAGGTTAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAAAATTAATCCAGTGGCGATAGATGATGAGGAAGATCGCTTCCATGGTGTGCGCCTGCAGACTTCGCCCCCAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGGAACCCCTGAACTTTGGTTCCAGTTATATTGTGTCTAATTCTGCTAACCTGAAAGTAATGCCCAAGGAGTTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAATTGTCCTACAGGAGCCCTGGAGAAATTCAGCACTTCTCAAAATTCTATGCTGGGCAGATGAAGGAACCCAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCAACTTGAGATTACTGAAAAAAGACATGGGACTTTGGTGTGGGATACTGAGGTGAAGCCAGTGGATCTCCAGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTGTAGCTGCATCAGCCCCTCCTCCTTTCTCAGGTGCAGCCTTTGTGAAGGAGAACCACCGGCAACTCCAAGCC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGGATGGGGGACCTGAAAGGGGTGCTCGATGATCTCCAAGACAATGAGGTTCTTACTGAGAATGAGAAGGAGCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGTGGAGCAGGAAAAGACACGGCAGAGCAAGAATGAGGCCTTGCTGAGCATGGTGGAGAAGAAAGGGGACCTGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCCTGGACGTGCTCTTCAGAAGCATTAGTGAAAGGGACCCTTACCTCGTGTCCTATCTTAGACAGCAGAATTTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TAAAATGAGTCAGTTAGGTAGTCTGGAAGAGAGAATCCAGCGTTCTCATTGGAAATGGATAAACAGAAATGTGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TCATTGATTTCAGTGTTCAAGACAGAAGAAGACTGGGTAACATCTATCACACAGGCTTTCAGGACAGACTTGTA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACCTGGCATGTACCTATTGACTGTATCCTCATGCATTTTCCTCAAGAATGTCTGAAGAAGGTAGTAATATTCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTTAAATTTTTTCCAACCATTGCTTGATATATCACTATTTTATCCATTGACATGATTCTTGAAGACCCAGGATA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AAGGACATCCGGATAGGTGTGTTTATGAAGGATGGGGCCTGGAAAGGCAACTTTTCCTGATTAATGTGAAAAAT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AATTCCTATGGACACTCCGTTTGAAGTATCACCTTCTCATAACTAAAAGCAGAAAAGCTAACAAAAGCTTCTCA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GCTGAGGACACTCAAGGCATACATGATGACAGTCTTTTTTTTTTTTGTATGTTAGGACTTTAACACTTTATCTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TGGCTACTGTTATTAGAACAATGTAAATGTATTTGCTGAAAGAGAGCACAAAAATGGGAGAAAATGCAAACATG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGCAGAAAATATTTTCCCACTGGTGTGTAGCCTGCTACAAGGAGTTGTTGGGTTAAATGTTCATGGTCAACTCC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAGGAATACTGAGATGAAATGTGGTAAATCAACTCCACAGAACCACCAAAAAGAAAATGAGGGTAATTCAGCTT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ATTCTGAGACAGACATTCCTGGCAATGTACCATACAAAAAATAAGCCAACTCTGACATTTGGATTCTACCATAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ACTCTGTCATTTTGTAGCCATTTCAGCTGTCTTTTGATTAATGTTTTCGTGGCACACATATTTCCATCCTTTTA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TGTTTAATCTGTTTAAAACAAGTTCCTAGTAGACACCATCTGGTTGAGTCAGTTTTTTTTATGGTGTATTTTGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ACCCATTCTGATAGTCTCTTTTAACTGGAAGATTTCAATTACTTACGTTAATGTAATTATTAATATGTTAGGAT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTATCCTCAGTCAGCCAGTTTGTTATGTCTTTTCTATTCTACTGTTATCACATTTGTACCACTTAAAGTGGAAT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CTAGGCACTTTATCACCATTTAGATCCTATTACCTTTTCTCATCTAGGATATAGTTATCTTCTACATAATCTTT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CTGTATCTTAAAACCCATCAATAAATTATTATATATTTTCTACTTTTAATCACTCAGAAGATTTAAAAAACTCA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGAGAAGAGTAATCTGTTATGTTTTTCCAGATATTTACCATTTCTGTTGCTCTTCCTTCATTATTTTCCAAATT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TCGTTCTGCAAATTTCCACTTCCTCTGATAGACGTTTTTTAGTTCTTTTAGAGTGGTTCTGATAGGTACAGATT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CTCTTATTTTTTGCTTCCTCTGAGGACATCTTTTTCTCACCTTCATTCTCAGTGATGTTTTTTGCTTGTAGTAT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TTTTAGTTGACATTGTTTTCTGTTCAGCAGTTTCCTTTTAGCTTCCGTATTTCCTGATGAGAAATCTGCAGTCA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  TTCAAATTGTTGTTTCCCTGTATGTAGTGTGTCATTTTTCTGTCAGATTTCAAGGTATTTATCTTTAGTTTTTA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  GCCATTTCATTATGTTGGGGATGAGTTTCCTTGTTTTATTCCCTTTGGAATTTGCTCCAATTCATAAATTTGCA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  GTTTTATGTCTTTTACCAAACTTAGAGGTTTTCAGCCTAATTTCTAAAAATACTTTTTATTAGCCTGATTTTCA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TCTTTATAGGAAATAGTTTAAGTGATGACAAGTTCCAATAGCTTATATGCCCAGAAGGCCTTCAAAATAAGAAT  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  TTTGAAAGAATACAGAAAACAAACTTTTATATCCTTCTCATGTCTTCTACTGTAAAATTCATATGCTTTGCTAC  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TCTAAACCTAGTTTGAAATCAACAGTCTTGAGAATAGATGAAAATTTTGATGAATAGTGGAATTCTTTTAAATG  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  GAAACCTCTTACATGTGATTTTCCTTGCCATCTAGAAATAAACCATAGTATTTATGTTGAATCAATCAATATTA  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  TATTTTGTTTTTTTCCTCCTCTTCTGAGACTCTTATTGTGGAAATGTTAGACTTTTATGTTTTCCTAAATGTCC  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  CTGATATTCTACTTATTTAGAACATCTTTTCATTTTTTCCATTATTCTGATTGGGTAATTTTAATTTGTCTATT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  TTCAAATTTGCTGGAGTGTTCACCTGTTGTTATCTGTGTCGTCCCACTGAGTGCATTCACCACCTTTTAAATTT  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  TGGTCACTGTATGTATCAGTTCTAAAATTTCCATTTTGTTCTCTATATTTTAAATTTCTTGCCTTATATTCTAT  4366

Query    1  ---------------------------------------------------ATGGAGTCTC-GCTCTGTTGCCC  22
                                                               |..|.||||| .|||||||.|||
Sbjct 4367  TTTCCTGCAAATGTGTCAGCATTTGCTTGTTTGAGCTTTTTTTTTTTCAAGACAGGGTCTCAACTCTGTTACCC  4440

Query   23  AGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTC  96
            |||||||||||||||||...||||||.|||||||||||||||||||| ||.|||||||||||||.||.||||||
Sbjct 4441  AGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGCCT-CCTGGTTCAAGCGATTATTGTGCCTC  4513

Query   97  AGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCAC-GCCCGGCTAA--TTTTGTATTTTTGGTCGAGAC  167
            ||||||||||||||||||||.||.||.||||||||||||| ||||.|||||  ||||||||||||.||.|||||
Sbjct 4514  AGCCTCCAGAGTAGCTGGGATTACAGGCATGCACCACCACAGCCCAGCTAATTTTTTGTATTTTTAGTAGAGAC  4587

Query  168  GGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAA  240
            .|.|||||||.|||||.|.|||||||||.|||||||||||.|||||||||||||| |||||||.||||||||||
Sbjct 4588  AGAGTTTTGCTATGTTGGCCAGGCTGGTTTTGAACTCCTGGCCTCAAGTGATCCACCCACCTCAGCCTCCCAAA  4661

Query  241  GTGTTGAGA-----------------------------------------------------------------  249
            |||.||.||                                                                 
Sbjct 4662  GTGCTGGGATTACAGGCCACTACACCTGGCACATTTGAGTATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGA  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  GTCTCGCTCTGTCATCTAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAGCCTCTGTCTCCCGGGCTCA  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  AGCGATTCTCTTGCCTCAGCCTCCTGAGTAGCTAGGACTACAGGTGCATGCCAACACGCCCGGCTAATTTTTTT  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  TTAAAAATATTTTTAGTAGAGACAGGGTTTCACCATTTTGGCCAGGATGGTCTTGATCTCCTGACCTCATGATC  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  CACCCGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTCATTTGAGTATTTTT  5031

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5032  ATAATGTCTCTTTTAAAGTCTTTGTCAGATAATTTCACTGTACATGTTATTCAGTGTTTGGTGTCCACTGAGTT  5105

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5106  GTCATTTGCCAGACAAGTGGAGATTTTTGCAGCTCATCCTTGTATTCTCAGTAGTTCCGATATGTACCCTCGAA  5179

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5180  ATGTGAATGTTATCTTATGAGACTCTGTTTTATTTGTATCCAACAGAAGATGTTTATTATTTATTTGGCTTTCT  5253

Query  250  --------------------------------------  249
                                                  
Sbjct 5254  GTGAACTGAGGTCTTAATATCAGCTCATTTTAAAAGTC  5291

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