Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
NM_001128606.1
Aligned Length:
2501
Identities:
1590
Gaps:
724

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGACAACAGAGAAGAGTTTAGCGGCTGAAGCTGAGAATTCTCAGCACCAGCAACAGAAGGAAGAAGGAGAGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCACAAACTCAGGCCAACAAGAAACTCAGCTGGAGGAGGCCTCCCAAGCGGCCGCAGCTGAGGGCAGCGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGGTGAGCAGAAGCTGAAAGCATCCAATGGGGACACTCCAACACATGAAGACTTGACCAAGAACAAGGAACGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATCAGAAAGCAGAGGCCTGTCACGACTGCTCTCCTCATTCCTCAAAAGGCCCAAGTCGCAGGTCTCTGAAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAAGGCAGAGAAGTAGAATCAGAGAAAGAGAAAGGTGAAGGGGGTCAGAAGGAGATAGAACTTGGAAACAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTGATGAAGACATCATTTTAAAGGCCCCCATTGCAGCTCCTGAACCTGAGCTCAAAACAGACCCATCTTTGGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTTCATTCATTAAGCAGTATAGAGACACAGCCAGCTCAGGAAGAACACAGAGAGGACCCAGATTCTGAAACGAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAAGGAGAAGGGATTGAAGAGTGCTCTGGAACAGAGGTGAAAGAGGACCCAGAGTCAAGAGCAGAGAGAGAAC  592

Query    1  --------------------------------------ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTT  36
                                                  ||||||||.|||||.||.||||||||||||||.||.
Sbjct  593  CCGAAGCCTCCCAGAAGCCCGTCAGAAGACACAGAAACATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTC  666

Query   37  TATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGATTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTT  110
            ||.|||||||||||.|||||||||||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||
Sbjct  667  TACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGACTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTT  740

Query  111  GGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACGCAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAA  184
            ||||||||||||.||||||.|||||.|.|||||.|.|||||||||||||||||||||||||||.||||||||||
Sbjct  741  GGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCGCAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAA  814

Query  185  TAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACATTTAATGTAAAGTTTTATCCACCTGACCCAGCACAG  258
            ||||||||||||||||.|||||.|||||||||||.|||||||||||.||||||||||||||.|||||||||||.
Sbjct  815  TAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACATTTAATGTGAAGTTTTATCCACCCGACCCAGCACAA  888

Query  259  TTAACAGAAGACATAACAAGATATTATTTATGTCTTCAGCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTG  332
            |||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct  889  TTAACAGAAGACATAACAAGATACTATTTATGTCTTCAGCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTG  962

Query  333  TTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCATCCAGTCTGAACTGGGAGACTACGACCCAGAACTCC  406
            ||||||||||||.|||||..||.|.||.||||||||.|||||||||||.|||||||||||.|||||||||||.|
Sbjct  963  TTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGATCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGC  1036

Query  407  ATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCGAATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAA  480
            |.|||.||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||||||
Sbjct 1037  ACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCAAATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAA  1110

Query  481  CTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTC  554
            .|||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1111  TTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTC  1184

Query  555  TATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGGAAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTG  628
            .||||||||||||||||||||.|||||||||||||||||.|||||.||.||.||.||.||.||||||||.||.|
Sbjct 1185  CATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGGAGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCG  1258

Query  629  GCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGCTTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAA  702
            |||||||||||||||||||.|||.||||||||||||||||.|||||||||||||||||.|||||||||||.|||
Sbjct 1259  GCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGCTTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAA  1332

Query  703  CGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCAAGAGCAGTATGAAAGTACCATCGGATTCAAACTTCC  776
            ||.||.|||||.|||||||||||.|||||||||||||||||.||.|||||||||||||||||.|||||.||.||
Sbjct 1333  CGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCAAGAACATTATGAAAGTACCATCGGCTTCAAGCTCCC  1406

Query  777  CAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTGTAGAACATCACACGTTTTTCAGATTGACATCTACAG  850
            ||||||.|||||.||.||||||.|||||||.||||||||.||.|||||||||||.||||||.|.||.|||||||
Sbjct 1407  CAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTGTGGAGCATCACACGTTCTTCAGACTCACCTCTACAG  1480

Query  851  ACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACC  924
            |||||||.|||||||||||.||||||||.||.|||||||||||.||||||||||||||||||||||||||||||
Sbjct 1481  ACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCCAAATTCCGATACAGTGGCCGGACTCAAGCTCAGACC  1554

Query  925  AGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAG  998
            ||||||||.|||||.||.||||||||||||||.||||||||.|||||.||||||||.||.|||||||||.||||
Sbjct 1555  AGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACACTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAG  1628

Query  999  CCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGG  1072
            ||||||||||||||||||||..||.||..||||||||||||||||||||||.|||||.||.||||||.|||||.
Sbjct 1629  CCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAAGTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGA  1702

Query 1073  GTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG  1141
            |||||||..||||||     |.||| .||||      ||    |||||||               |||..||||
Sbjct 1703  GTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------TC----AAAAAAA---------------CACCAAAGG  1750

Query 1142  AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGG  1215
            ||.|.|||||||.|||||.|||...||.|||.|||||..||||||..||||||||.||||||||||||||||||
Sbjct 1751  AAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCGGCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGG  1824

Query 1216  AAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGA  1289
            |                                                               ||||||||||
Sbjct 1825  A---------------------------------------------------------------AGGATTTAGA  1835

Query 1290  CAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTAC  1363
            ||||||||||||.|||||||||||.||.|||||||||||||||||.||||||||||||||.|||||.||.||||
Sbjct 1836  CAAGAGTCAAGAAGAGATCAAAAAGCACCATGCCAGCATCAGTGAACTGAAAAAGAACTTTATGGAATCGGTAC  1909

Query 1364  CAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGG  1437
            |.|||||||||||.||.||.|||||.||.||||||||.||.||||||||||||||.||||||||||||||.|||
Sbjct 1910  CCGAACCACGGCCCAGCGAGTGGGACAAGCGCTTATCTACACACTCACCCTTCCGGACTCTTAACATCAACGGG  1983

Query 1438  CAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCACCATCTCAGATAATGCCAATGCTGT  1511
            |||.||||.||.|||||.||||||||.|||||.|||||.||||||||||||||||||||||.||||||||||||
Sbjct 1984  CAAGTCCCTACTGGAGATGGACCTCCTCTGGTAAAGACTCAAACTGTCACCATCTCAGATACTGCCAATGCTGT  2057

Query 1512  GAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCC  1585
            ||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.|||||||
Sbjct 2058  GAAAAGTGAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACCAAGACCATCACCTATGAAGCTGCCC  2131

Query 1586  AGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCA  1659
            |||||||.||||.||.|||.|||||.|||||.|||||||||||||||||.||.||.||||||||.||||||.||
Sbjct 2132  AGACTGAGGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGACCATCACATCCGAGACCACA  2205

Query 1660  AGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAAT  1733
            ||.||.||.|||||.||.||.|||||||||||||||||||||||||||||.|||||.||.||.||.||||||||
Sbjct 2206  AGTAGTACAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGACCCGGATCGAGAAGAGAAT  2279

Query 1734  TGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGC  1807
            ||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.||||||||||
Sbjct 2280  TGTGATCACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAAGCCAAGGAGCAGC  2353

Query 1808  ACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGATGAG  1866
            |.|||||||||||||||||||||||||||||||||||||||||.|||||..||||.|||
Sbjct 2354  ATCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGAGGAG  2412

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