Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
NM_183428.3
Aligned Length:
2600
Identities:
1652
Gaps:
760

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGACAACAGAGAAGAGTTTAGCGGCTGAAGCTGAGAATTCTCAGCACCAGCAACAGAAGGAAGAAGGAGAGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCACAAACTCAGGCCAACAAGAAACTCAGCTGGAGGAGGCCTCCCAAGCGGCCGCAGCTGAGGGCAGCGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGGTGAGCAGAAGCTGAAAGCATCCAATGGGGACACTCCAACACATGAAGACTTGACCAAGAACAAGGAACGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATCAGAAAGCAGAGGCCTGTCACGACTGCTCTCCTCATTCCTCAAAAGGCCCAAGTCGCAGGTCTCTGAAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAAGGCAGAGAAGTAGAATCAGAGAAAGAGAAAGGTGAAGGGGGTCAGAAGGAGATAGAACTTGGAAACAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTGATGAAGACATCATTTTAAAGGCCCCCATTGCAGCTCCTGAACCTGAGCTCAAAACAGACCCATCTTTGGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTTCATTCATTAAGCAGTATAGAGACACAGCCAGCTCAGGAAGAACACAGAGAGGACCCAGATTCTGAAACGAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAAGGAGAAGGGATTGAAGAGTGCTCTGGAACAGAGGTGAAAGAGGACCCAGAGTCAAGAGCAGAGAGAGAAC  592

Query    1  --------------------------------------ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTT  36
                                                  ||||||||.|||||.||.||||||||||||||.||.
Sbjct  593  CCGAAGCCTCCCAGAAGCCCGTCAGAAGACACAGAAACATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTC  666

Query   37  TATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGATTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTT  110
            ||.|||||||||||.|||||||||||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||
Sbjct  667  TACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGACTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTT  740

Query  111  GGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACGCAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAA  184
            ||||||||||||.||||||.|||||.|.|||||.|.|||||||||||||||||||||||||||.||||||||||
Sbjct  741  GGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCGCAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAA  814

Query  185  TAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACATTTAATGTAAAGTTTTATCCACCTGACCCAGCACAG  258
            ||||||||||||||||.|||||.|||||||||||.|||||||||||.||||||||||||||.|||||||||||.
Sbjct  815  TAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACATTTAATGTGAAGTTTTATCCACCCGACCCAGCACAA  888

Query  259  TTAACAGAAGACATAACAAGATATTATTTATGTCTTCAGCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTG  332
            |||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct  889  TTAACAGAAGACATAACAAGATACTATTTATGTCTTCAGCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTG  962

Query  333  TTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCATCCAGTCTGAACTGGGAGACTACGACCCAGAACTCC  406
            ||||||||||||.|||||..||.|.||.||||||||.|||||||||||.|||||||||||.|||||||||||.|
Sbjct  963  TTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGATCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGC  1036

Query  407  ATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCGAATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAA  480
            |.|||.||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||||||
Sbjct 1037  ACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCAAATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAA  1110

Query  481  CTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTC  554
            .|||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1111  TTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTC  1184

Query  555  TATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGGAAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTG  628
            .||||||||||||||||||||.|||||||||||||||||.|||||.||.||.||.||.||.||||||||.||.|
Sbjct 1185  CATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGGAGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCG  1258

Query  629  GCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGCTTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAA  702
            |||||||||||||||||||.|||.||||||||||||||||.|||||||||||||||||.|||||||||||.|||
Sbjct 1259  GCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGCTTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAA  1332

Query  703  CGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCAAGAGCAGTATGAAAGTACCATCGGATTCAAACTTCC  776
            ||.||.|||||.|||||||||||.|||||||||||||||||.||.|||||||||||||||||.|||||.||.||
Sbjct 1333  CGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCAAGAACATTATGAAAGTACCATCGGCTTCAAGCTCCC  1406

Query  777  CAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTGTAGAACATCACACGTTTTTCAGATTGACATCTACAG  850
            ||||||.|||||.||.||||||.|||||||.||||||||.||.|||||||||||.||||||.|.||.|||||||
Sbjct 1407  CAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTGTGGAGCATCACACGTTCTTCAGACTCACCTCTACAG  1480

Query  851  ACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACC  924
            |||||||.|||||||||||.||||||||.||.|||||||||||.||||||||||||||||||||||||||||||
Sbjct 1481  ACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCCAAATTCCGATACAGTGGCCGGACTCAAGCTCAGACC  1554

Query  925  AGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAG  998
            ||||||||.|||||.||.||||||||||||||.||||||||.|||||.||||||||.||.|||||||||.||||
Sbjct 1555  AGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACACTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAG  1628

Query  999  CCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGG  1072
            ||||||||||||||||||||..||.||..||||||||||||||||||||||.|||||.||.||||||.|||||.
Sbjct 1629  CCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAAGTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGA  1702

Query 1073  GTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG  1141
            |||||||..||||||     |.||| .||||      ||    |||||||               |||..||||
Sbjct 1703  GTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------TC----AAAAAAA---------------CACCAAAGG  1750

Query 1142  AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCAT--  1213
            ||.|.|||||||.|||||.|||...||.|||.|||||..||||||..||||||||.||||||||||||||||  
Sbjct 1751  AAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCGGCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGG  1824

Query 1214  --------------------------------------------------------------------------  1213
                                                                                      
Sbjct 1825  AAGGTGGAAAAAACCCACACCGAGGTCACAGTACCTACCTCAAATGGTGACCAAACGCAGAAGCTTGCAGGAAA  1898

Query 1214  -----------------------GGAAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATA  1264
                                   ||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1899  AGGTGAAGATCTGATAAGAATGAGGAAGAAAAAGAGAGAGAGACTAGATGGTGAAAACATTTATATCAGACATA  1972

Query 1265  GCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTG  1338
            |||||||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||.|||
Sbjct 1973  GCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAAGAGATCAAAAAGCACCATGCCAGCATCAGTGAACTG  2046

Query 1339  AAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCACC  1412
            |||||||||||.|||||.||.|||||.|||||||||||.||.||.|||||.||.||||||||.||.||||||||
Sbjct 2047  AAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCCCAGCGAGTGGGACAAGCGCTTATCTACACACTCACC  2120

Query 1413  CTTCCGAACTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCA  1486
            ||||||.||||||||||||||.||||||.||||.||.|||||.||||||||.|||||.|||||.||||||||||
Sbjct 2121  CTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTGGAGATGGACCTCCTCTGGTAAAGACTCAAACTGTCA  2194

Query 1487  CCATCTCAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACC  1560
            ||||||||||||.||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 2195  CCATCTCAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACC  2268

Query 1561  AAGACCATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGC  1634
            |||||||||||.|||||.||||||||||||||.||||.||.|||.|||||.|||||.|||||||||||||||||
Sbjct 2269  AAGACCATCACCTATGAAGCTGCCCAGACTGAGGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGC  2342

Query 1635  TCAAACTATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTT  1708
            .||.||.||||||||.||||||.||||.||.||.|||||.||.||.||||||||||||||||||||||||||||
Sbjct 2343  CCAGACCATCACATCCGAGACCACAAGTAGTACAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTT  2416

Query 1709  CAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAA  1782
            |.|||||.||.||.||.||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||
Sbjct 2417  CTGAGACCCGGATCGAGAAGAGAATTGTGATCACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAA  2490

Query 1783  GCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGAT  1856
            |||||||||||.||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 2491  GCCATCAAGGAAGCCAAGGAGCAGCATCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGAT  2564

Query 1857  TGCTGATGAG  1866
            ..||||.|||
Sbjct 2565  CTCTGAGGAG  2574

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