Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_006538894.3
Aligned Length:
2471
Identities:
1653
Gaps:
634

Alignment

Query    1  ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGA  74
            ||||||||.|||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGA  74

Query   75  TTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACG  148
            .|||||.||.|||||.||.|||||.|||||.|||||||||||||||||.||||||.|||||.|.|||||.|.||
Sbjct   75  CTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCG  148

Query  149  CAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACA  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct  149  CAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACA  222

Query  223  TTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTAACAGAAGACATAACAAGATATTATTTATGTCTTCA  296
            ||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct  223  TTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGATACTATTTATGTCTTCA  296

Query  297  GCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCA  370
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||..||.|.||.||||||||.|
Sbjct  297  GCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGA  370

Query  371  TCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCG  444
            ||||||||||.|||||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.||.
Sbjct  371  TCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCA  444

Query  445  AATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGC  518
            |||||||||||||||||||||||.||||||||||||.|||||||.|||||||||||||||||||||||||||||
Sbjct  445  AATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGC  518

Query  519  TGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGG  592
            |||||||||.||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  519  TGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGG  592

Query  593  AAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGC  666
            |.|||||.||.||.||.||.||.||||||||.||.||||||||||||||||||||.|||.||||||||||||||
Sbjct  593  AGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGC  666

Query  667  TTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCA  740
            ||.|||||||||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||||||||||||||
Sbjct  667  TTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCA  740

Query  741  AGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTG  814
            |||.||.|||||||||||||||||.|||||.||.||||||||.|||||.||.||||||.|||||||.|||||||
Sbjct  741  AGAACATTATGAAAGTACCATCGGCTTCAAGCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTG  814

Query  815  TAGAACATCACACGTTTTTCAGATTGACATCTACAGACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCC  888
            |.||.|||||||||||.||||||.|.||.||||||||||||||.|||||||||||.||||||||.||.||||||
Sbjct  815  TGGAGCATCACACGTTCTTCAGACTCACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCC  888

Query  889  AAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACA  962
            |||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||
Sbjct  889  AAATTCCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACA  962

Query  963  CTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAA  1036
            |||.|||||.||||||||.||.|||||||||.|||||||||||||||||||.|||   ||.||..|||||||||
Sbjct  963  CTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCTGCT---GAGTCCACAGACCGAA  1033

Query 1037  GTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCT  1105
            |||||||||||||.|||||.||.||||||.|||||.|||||||..||||||     |.||| .||||      |
Sbjct 1034  GTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------T  1100

Query 1106  CTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCA  1179
            |    |||||||               |||..||||||.|.|||||||.|||||.|||...||.|||.|||||.
Sbjct 1101  C----AAAAAAA---------------CACCAAAGGAAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCG  1155

Query 1180  CCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCAT----------------------------------------  1213
            .||||||..||||||||.||||||||||||||||                                        
Sbjct 1156  GCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGGAAGGTGGAAAAAACCCACACCGAGGTCACAGTACCTAC  1229

Query 1214  -----------------------------------------------------------GGAAGAAAAAGAGAG  1228
                                                                       |||||||||||||||
Sbjct 1230  CTCAAATGGTGACCAAACGCAGAAGCTTGCAGGAAAAGGTGAAGATCTGATAAGAATGAGGAAGAAAAAGAGAG  1303

Query 1229  AAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAG  1302
            |.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1304  AGAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAA  1377

Query 1303  GAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCC  1376
            |||||||||||.||.|||||||||||||||||.||||||||||||||.|||||.||.|||||.|||||||||||
Sbjct 1378  GAGATCAAAAAGCACCATGCCAGCATCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCC  1451

Query 1377  TAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC------  1444
            .||.||.|||||.||.||||||||.||.||||||||||||||.||||||||||||||.||||||.|||      
Sbjct 1452  CAGCGAGTGGGACAAGCGCTTATCTACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTG  1525

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1526  GAGATGGAGTGAAGAAAACTTCTATCCTCCCCTCGGGAAGAAAGGTTGGTGGGCCAGAGAGTGTAAATGGCATT  1599

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1600  CGAACAGAGGAGGTGGCTACCGTGACAAAAGGGCCATCCACCTACCCTGCCTCTGAATGGGAGTGCCCCAAACA  1673

Query 1445  ----------------------------------------------CCACAG----------------------  1450
                                                          ||||||                      
Sbjct 1674  GTCAGTAGTTCCTAGTCAGAGCCTGATGACCACTCCGCCGGCGTCTCCACAGAGCTTTGGTTCTGGCTCCCTCT  1747

Query 1451  -----------------------GAGAAGGA-------------------------------------------  1458
                                   ||||||||                                           
Sbjct 1748  CCATAAACAGCAAGGAGGCGGAAGAGAAGGAGCAGGGGGCAGCTGGCTATCTTGATGCTGAAGAGATGCCAACA  1821

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1822  GGCCCAAGTGGGGAATGCTTAGGAGTGGAGGAACAGGCCAGTGCATTCAGTTTCCCAGTAACTCCAGCTTCCTG  1895

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1896  CCAGCTGCAACTCGGTGGGGAAAAGGCAGACAGTAGCGAAGAGCTGGGTGCAGCAGCAGAGACCCTTGAGACCC  1969

Query 1459  -----------------------------------------------------------------CCTCCCCTG  1467
                                                                             |||||.|||
Sbjct 1970  AGAGCGGATCCTTTCTTGACTCACCTGTGGGTAACCAGTTCCCCACCCTCATTCGAAGTTTCCAGCCTCCTCTG  2043

Query 1468  GTGAAGACACAAACTGTCACCATCTCAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCC  1541
            ||.|||||.||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||.|||||
Sbjct 2044  GTAAAGACTCAAACTGTCACCATCTCAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGATGTCCC  2117

Query 1542  TATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACC  1615
            ||||||||||||||||||||||||||||||.|||||.||||||||||||||.||||.||.|||.|||||.||||
Sbjct 2118  TATTGTCCACACTGAGACCAAGACCATCACCTATGAAGCTGCCCAGACTGAGGACAGCAATGGGGACTTAGACC  2191

Query 1616  CAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAG  1689
            |.|||||||||||||||||.||.||.||||||||.||||||.||||.||.||.|||||.||.||.|||||||||
Sbjct 2192  CTGGAGTCTTGCTGACAGCCCAGACCATCACATCCGAGACCACAAGTAGTACAACCACGACACAGATTACCAAG  2265

Query 1690  ACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCA  1763
            ||||||||||||||||||||.|||||.||.||.||.||||||||||||||||||||||||||.|||||.|||||
Sbjct 2266  ACTGTAAAAGGTGGGATTTCTGAGACCCGGATCGAGAAGAGAATTGTGATCACAGGAGATGCCGATATCGACCA  2339

Query 1764  TGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCG  1837
            ||||||||||||||||||||||||||||||.||.|||||||||||.||||||||||||||||||||||||||||
Sbjct 2340  TGATCAGGTCCTTGTACAAGCCATCAAGGAAGCCAAGGAGCAGCATCCAGACATGTCAGTGACCAAGGTGGTCG  2413

Query 1838  TCCACCAGGAGACCGAGATTGCTGATGAG  1866
            |||||||||||||.|||||..||||.|||
Sbjct 2414  TCCACCAGGAGACAGAGATCTCTGAGGAG  2442

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