Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_006538896.3
Aligned Length:
2429
Identities:
1655
Gaps:
589

Alignment

Query    1  ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGA  74
            ||||||||.|||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGA  74

Query   75  TTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACG  148
            .|||||.||.|||||.||.|||||.|||||.|||||||||||||||||.||||||.|||||.|.|||||.|.||
Sbjct   75  CTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCG  148

Query  149  CAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACA  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct  149  CAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACA  222

Query  223  TTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTAACAGAAGACATAACAAGATATTATTTATGTCTTCA  296
            ||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct  223  TTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGATACTATTTATGTCTTCA  296

Query  297  GCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCA  370
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||..||.|.||.||||||||.|
Sbjct  297  GCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGA  370

Query  371  TCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCG  444
            ||||||||||.|||||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.||.
Sbjct  371  TCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCA  444

Query  445  AATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGC  518
            |||||||||||||||||||||||.||||||||||||.|||||||.|||||||||||||||||||||||||||||
Sbjct  445  AATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGC  518

Query  519  TGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGG  592
            |||||||||.||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  519  TGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGG  592

Query  593  AAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGC  666
            |.|||||.||.||.||.||.||.||||||||.||.||||||||||||||||||||.|||.||||||||||||||
Sbjct  593  AGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGC  666

Query  667  TTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCA  740
            ||.|||||||||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||||||||||||||
Sbjct  667  TTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCA  740

Query  741  AGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTG  814
            |||.||.|||||||||||||||||.|||||.||.||||||||.|||||.||.||||||.|||||||.|||||||
Sbjct  741  AGAACATTATGAAAGTACCATCGGCTTCAAGCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTG  814

Query  815  TAGAACATCACACGTTTTTCAGATTGACATCTACAGACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCC  888
            |.||.|||||||||||.||||||.|.||.||||||||||||||.|||||||||||.||||||||.||.||||||
Sbjct  815  TGGAGCATCACACGTTCTTCAGACTCACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCC  888

Query  889  AAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACA  962
            |||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||
Sbjct  889  AAATTCCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACA  962

Query  963  CTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAA  1036
            |||.|||||.||||||||.||.|||||||||.||||||||||||||||||||||||..||.||..|||||||||
Sbjct  963  CTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAA  1036

Query 1037  GTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCT  1105
            |||||||||||||.|||||.||.||||||.|||||.|||||||..||||||     |.||| .||||      |
Sbjct 1037  GTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------T  1103

Query 1106  CTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCA  1179
            |    |||||||               |||..||||||.|.|||||||.|||||.|||...||.|||.|||||.
Sbjct 1104  C----AAAAAAA---------------CACCAAAGGAAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCG  1158

Query 1180  CCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGA-------------------------------------  1216
            .||||||..||||||||.|||||||||||||||||||                                     
Sbjct 1159  GCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGGAAGGTGGAAAAAACCCACACCGAGGTCACAGTACCTAC  1232

Query 1217  --------------------AGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATT  1270
                                |||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1233  CTCAAATGGTGACCAAACGCAGAAAAAGAGAGAGAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATT  1306

Query 1271  TAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAG  1344
            |||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||.|||||||||
Sbjct 1307  TAATGTTGGAGGATTTAGACAAGAGTCAAGAAGAGATCAAAAAGCACCATGCCAGCATCAGTGAACTGAAAAAG  1380

Query 1345  AACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCG  1418
            |||||.|||||.||.|||||.|||||||||||.||.||.|||||.||.||||||||.||.||||||||||||||
Sbjct 1381  AACTTTATGGAATCGGTACCCGAACCACGGCCCAGCGAGTGGGACAAGCGCTTATCTACACACTCACCCTTCCG  1454

Query 1419  AACTCTTAACATCAATGGGCAAATCC------------------------------------------------  1444
            .||||||||||||||.||||||.|||                                                
Sbjct 1455  GACTCTTAACATCAACGGGCAAGTCCCTACTGGAGATGGAGTGAAGAAAACTTCTATCCTCCCCTCGGGAAGAA  1528

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1529  AGGTTGGTGGGCCAGAGAGTGTAAATGGCATTCGAACAGAGGAGGTGGCTACCGTGACAAAAGGGCCATCCACC  1602

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1603  TACCCTGCCTCTGAATGGGAGTGCCCCAAACAGTCAGTAGTTCCTAGTCAGAGCCTGATGACCACTCCGCCGGC  1676

Query 1445  ----CCACAG---------------------------------------------GAGAAGGA-----------  1458
                ||||||                                             ||||||||           
Sbjct 1677  GTCTCCACAGAGCTTTGGTTCTGGCTCCCTCTCCATAAACAGCAAGGAGGCGGAAGAGAAGGAGCAGGGGGCAG  1750

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1751  CTGGCTATCTTGATGCTGAAGAGATGCCAACAGGCCCAAGTGGGGAATGCTTAGGAGTGGAGGAACAGGCCAGT  1824

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1825  GCATTCAGTTTCCCAGTAACTCCAGCTTCCTGCCAGCTGCAACTCGGTGGGGAAAAGGCAGACAGTAGCGAAGA  1898

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1899  GCTGGGTGCAGCAGCAGAGACCCTTGAGACCCAGAGCGGATCCTTTCTTGACTCACCTGTGGGTAACCAGTTCC  1972

Query 1459  -----------------------CCTCCCCTGGTGAAGACACAAACTGTCACCATCTCAGATAATGCCAATGCT  1509
                                   |||||.|||||.|||||.||||||||||||||||||||||.||||||||||
Sbjct 1973  CCACCCTCATTCGAAGTTTCCAGCCTCCTCTGGTAAAGACTCAAACTGTCACCATCTCAGATACTGCCAATGCT  2046

Query 1510  GTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTGC  1583
            ||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.|||||
Sbjct 2047  GTGAAAAGTGAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACCAAGACCATCACCTATGAAGCTGC  2120

Query 1584  CCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCC  1657
            |||||||||.||||.||.|||.|||||.|||||.|||||||||||||||||.||.||.||||||||.||||||.
Sbjct 2121  CCAGACTGAGGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGACCATCACATCCGAGACCA  2194

Query 1658  CAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGA  1731
            ||||.||.||.|||||.||.||.|||||||||||||||||||||||||||||.|||||.||.||.||.||||||
Sbjct 2195  CAAGTAGTACAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGACCCGGATCGAGAAGAGA  2268

Query 1732  ATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCA  1805
            ||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.||||||||
Sbjct 2269  ATTGTGATCACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAAGCCAAGGAGCA  2342

Query 1806  GCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGATGAG  1866
            |||.|||||||||||||||||||||||||||||||||||||||||.|||||..||||.|||
Sbjct 2343  GCATCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGAGGAG  2403

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