Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_006538897.3
Aligned Length:
2420
Identities:
1655
Gaps:
580

Alignment

Query    1  ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGA  74
            ||||||||.|||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGA  74

Query   75  TTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACG  148
            .|||||.||.|||||.||.|||||.|||||.|||||||||||||||||.||||||.|||||.|.|||||.|.||
Sbjct   75  CTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCG  148

Query  149  CAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACA  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct  149  CAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACA  222

Query  223  TTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTAACAGAAGACATAACAAGATATTATTTATGTCTTCA  296
            ||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct  223  TTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGATACTATTTATGTCTTCA  296

Query  297  GCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCA  370
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||..||.|.||.||||||||.|
Sbjct  297  GCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGA  370

Query  371  TCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCG  444
            ||||||||||.|||||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.||.
Sbjct  371  TCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCA  444

Query  445  AATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGC  518
            |||||||||||||||||||||||.||||||||||||.|||||||.|||||||||||||||||||||||||||||
Sbjct  445  AATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGC  518

Query  519  TGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGG  592
            |||||||||.||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  519  TGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGG  592

Query  593  AAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGC  666
            |.|||||.||.||.||.||.||.||||||||.||.||||||||||||||||||||.|||.||||||||||||||
Sbjct  593  AGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGC  666

Query  667  TTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCA  740
            ||.|||||||||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||||||||||||||
Sbjct  667  TTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCA  740

Query  741  AGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTG  814
            |||.||.|||||||||||||||||.|||||.||.||||||||.|||||.||.||||||.|||||||.|||||||
Sbjct  741  AGAACATTATGAAAGTACCATCGGCTTCAAGCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTG  814

Query  815  TAGAACATCACACGTTTTTCAGATTGACATCTACAGACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCC  888
            |.||.|||||||||||.||||||.|.||.||||||||||||||.|||||||||||.||||||||.||.||||||
Sbjct  815  TGGAGCATCACACGTTCTTCAGACTCACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCC  888

Query  889  AAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACA  962
            |||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||
Sbjct  889  AAATTCCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACA  962

Query  963  CTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAA  1036
            |||.|||||.||||||||.||.|||||||||.||||||||||||||||||||||||..||.||..|||||||||
Sbjct  963  CTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAA  1036

Query 1037  GTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCT  1105
            |||||||||||||.|||||.||.||||||.|||||.|||||||..||||||     |.||| .||||      |
Sbjct 1037  GTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------T  1103

Query 1106  CTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCA  1179
            |    |||||||               |||..||||||.|.|||||||.|||||.|||...||.|||.|||||.
Sbjct 1104  C----AAAAAAA---------------CACCAAAGGAAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCG  1158

Query 1180  CCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCAT----------------------------------------  1213
            .||||||..||||||||.||||||||||||||||                                        
Sbjct 1159  GCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGGAAGGTGGAAAAAACCCACACCGAGGTCACAGTACCTAC  1232

Query 1214  -----------------------------------------------------------GGAAGAAAAAGAGAG  1228
                                                                       |||||||||||||||
Sbjct 1233  CTCAAATGGTGACCAAACGCAGAAGCTTGCAGGAAAAGGTGAAGATCTGATAAGAATGAGGAAGAAAAAGAGAG  1306

Query 1229  AAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAG  1302
            |.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1307  AGAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAA  1380

Query 1303  GAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCC  1376
            |||||||||||.||.|||||||||||||||||.||||||||||||||.|||||.||.|||||.|||||||||||
Sbjct 1381  GAGATCAAAAAGCACCATGCCAGCATCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCC  1454

Query 1377  TAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC------  1444
            .||.||.|||||.||.||||||||.||.||||||||||||||.||||||||||||||.||||||.|||      
Sbjct 1455  CAGCGAGTGGGACAAGCGCTTATCTACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTG  1528

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1529  GAGATGGAAGTGTAAATGGCATTCGAACAGAGGAGGTGGCTACCGTGACAAAAGGGCCATCCACCTACCCTGCC  1602

Query 1445  ---------------------------------------------------------------------CCACA  1449
                                                                                 |||||
Sbjct 1603  TCTGAATGGGAGTGCCCCAAACAGTCAGTAGTTCCTAGTCAGAGCCTGATGACCACTCCGCCGGCGTCTCCACA  1676

Query 1450  G---------------------------------------------GAGAAGGA--------------------  1458
            |                                             ||||||||                    
Sbjct 1677  GAGCTTTGGTTCTGGCTCCCTCTCCATAAACAGCAAGGAGGCGGAAGAGAAGGAGCAGGGGGCAGCTGGCTATC  1750

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1751  TTGATGCTGAAGAGATGCCAACAGGCCCAAGTGGGGAATGCTTAGGAGTGGAGGAACAGGCCAGTGCATTCAGT  1824

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1825  TTCCCAGTAACTCCAGCTTCCTGCCAGCTGCAACTCGGTGGGGAAAAGGCAGACAGTAGCGAAGAGCTGGGTGC  1898

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1899  AGCAGCAGAGACCCTTGAGACCCAGAGCGGATCCTTTCTTGACTCACCTGTGGGTAACCAGTTCCCCACCCTCA  1972

Query 1459  --------------CCTCCCCTGGTGAAGACACAAACTGTCACCATCTCAGATAATGCCAATGCTGTGAAAAGT  1518
                          |||||.|||||.|||||.||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1973  TTCGAAGTTTCCAGCCTCCTCTGGTAAAGACTCAAACTGTCACCATCTCAGATACTGCCAATGCTGTGAAAAGT  2046

Query 1519  GAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCCAGACTGA  1592
            |||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct 2047  GAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACCAAGACCATCACCTATGAAGCTGCCCAGACTGA  2120

Query 1593  CGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCA  1666
            .||||.||.|||.|||||.|||||.|||||||||||||||||.||.||.||||||||.||||||.||||.||.|
Sbjct 2121  GGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGACCATCACATCCGAGACCACAAGTAGTA  2194

Query 1667  CCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATC  1740
            |.|||||.||.||.|||||||||||||||||||||||||||||.|||||.||.||.||.|||||||||||||||
Sbjct 2195  CAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGACCCGGATCGAGAAGAGAATTGTGATC  2268

Query 1741  ACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGA  1814
            |||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||||||||||.|||||
Sbjct 2269  ACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAAGCCAAGGAGCAGCATCCAGA  2342

Query 1815  CATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGATGAG  1866
            ||||||||||||||||||||||||||||||||||||.|||||..||||.|||
Sbjct 2343  CATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGAGGAG  2394

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