Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_006538899.3
Aligned Length:
2372
Identities:
1655
Gaps:
532

Alignment

Query    1  ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGA  74
            ||||||||.|||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGA  74

Query   75  TTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACG  148
            .|||||.||.|||||.||.|||||.|||||.|||||||||||||||||.||||||.|||||.|.|||||.|.||
Sbjct   75  CTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCG  148

Query  149  CAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACA  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct  149  CAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACA  222

Query  223  TTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTAACAGAAGACATAACAAGATATTATTTATGTCTTCA  296
            ||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct  223  TTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGATACTATTTATGTCTTCA  296

Query  297  GCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCA  370
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||..||.|.||.||||||||.|
Sbjct  297  GCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGA  370

Query  371  TCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCG  444
            ||||||||||.|||||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.||.
Sbjct  371  TCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCA  444

Query  445  AATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGC  518
            |||||||||||||||||||||||.||||||||||||.|||||||.|||||||||||||||||||||||||||||
Sbjct  445  AATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGC  518

Query  519  TGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGG  592
            |||||||||.||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  519  TGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGG  592

Query  593  AAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGC  666
            |.|||||.||.||.||.||.||.||||||||.||.||||||||||||||||||||.|||.||||||||||||||
Sbjct  593  AGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGC  666

Query  667  TTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCA  740
            ||.|||||||||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||||||||||||||
Sbjct  667  TTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCA  740

Query  741  AGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTG  814
            |||.||.|||||||||||||||||.|||||.||.||||||||.|||||.||.||||||.|||||||.|||||||
Sbjct  741  AGAACATTATGAAAGTACCATCGGCTTCAAGCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTG  814

Query  815  TAGAACATCACACGTTTTTCAGATTGACATCTACAGACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCC  888
            |.||.|||||||||||.||||||.|.||.||||||||||||||.|||||||||||.||||||||.||.||||||
Sbjct  815  TGGAGCATCACACGTTCTTCAGACTCACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCC  888

Query  889  AAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACA  962
            |||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||
Sbjct  889  AAATTCCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACA  962

Query  963  CTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAA  1036
            |||.|||||.||||||||.||.|||||||||.||||||||||||||||||||||||..||.||..|||||||||
Sbjct  963  CTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAA  1036

Query 1037  GTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCT  1105
            |||||||||||||.|||||.||.||||||.|||||.|||||||..||||||     |.||| .||||      |
Sbjct 1037  GTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------T  1103

Query 1106  CTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCA  1179
            |    |||||||               |||..||||||.|.|||||||.|||||.|||...||.|||.|||||.
Sbjct 1104  C----AAAAAAA---------------CACCAAAGGAAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCG  1158

Query 1180  CCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTA  1253
            .||||||..||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1159  GCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAGAGACTAGATGGTGAAAACATTTA  1232

Query 1254  TATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCA  1327
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1233  TATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAAGAGATCAAAAAGCACCATGCCAGCA  1306

Query 1328  TCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCC  1401
            |||||||.||||||||||||||.|||||.||.|||||.|||||||||||.||.||.|||||.||.||||||||.
Sbjct 1307  TCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCCCAGCGAGTGGGACAAGCGCTTATCT  1380

Query 1402  ACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC-------------------------------  1444
            ||.||||||||||||||.||||||||||||||.||||||.|||                               
Sbjct 1381  ACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTGGAGATGGAGTGAAGAAAACTTCTAT  1454

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1455  CCTCCCCTCGGGAAGAAAGGTTGGTGGGCCAGAGAGTGTAAATGGCATTCGAACAGAGGAGGTGGCTACCGTGA  1528

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1529  CAAAAGGGCCATCCACCTACCCTGCCTCTGAATGGGAGTGCCCCAAACAGTCAGTAGTTCCTAGTCAGAGCCTG  1602

Query 1445  ---------------------CCACAG---------------------------------------------GA  1452
                                 ||||||                                             ||
Sbjct 1603  ATGACCACTCCGCCGGCGTCTCCACAGAGCTTTGGTTCTGGCTCCCTCTCCATAAACAGCAAGGAGGCGGAAGA  1676

Query 1453  GAAGGA--------------------------------------------------------------------  1458
            ||||||                                                                    
Sbjct 1677  GAAGGAGCAGGGGGCAGCTGGCTATCTTGATGCTGAAGAGATGCCAACAGGCCCAAGTGGGGAATGCTTAGGAG  1750

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1751  TGGAGGAACAGGCCAGTGCATTCAGTTTCCCAGTAACTCCAGCTTCCTGCCAGCTGCAACTCGGTGGGGAAAAG  1824

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1825  GCAGACAGTAGCGAAGAGCTGGGTGCAGCAGCAGAGACCCTTGAGACCCAGAGCGGATCCTTTCTTGACTCACC  1898

Query 1459  ----------------------------------------CCTCCCCTGGTGAAGACACAAACTGTCACCATCT  1492
                                                    |||||.|||||.|||||.||||||||||||||||
Sbjct 1899  TGTGGGTAACCAGTTCCCCACCCTCATTCGAAGTTTCCAGCCTCCTCTGGTAAAGACTCAAACTGTCACCATCT  1972

Query 1493  CAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACC  1566
            ||||||.||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1973  CAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACCAAGACC  2046

Query 1567  ATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAAC  1640
            |||||.|||||.||||||||||||||.||||.||.|||.|||||.|||||.|||||||||||||||||.||.||
Sbjct 2047  ATCACCTATGAAGCTGCCCAGACTGAGGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGAC  2120

Query 1641  TATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGA  1714
            .||||||||.||||||.||||.||.||.|||||.||.||.|||||||||||||||||||||||||||||.||||
Sbjct 2121  CATCACATCCGAGACCACAAGTAGTACAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGA  2194

Query 1715  CACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATC  1788
            |.||.||.||.||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||
Sbjct 2195  CCCGGATCGAGAAGAGAATTGTGATCACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATC  2268

Query 1789  AAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGA  1862
            |||||.||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||..||||
Sbjct 2269  AAGGAAGCCAAGGAGCAGCATCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGA  2342

Query 1863  TGAG  1866
            .|||
Sbjct 2343  GGAG  2346

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.