Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_006538900.3
Aligned Length:
2372
Identities:
1653
Gaps:
535

Alignment

Query    1  ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGA  74
            ||||||||.|||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGA  74

Query   75  TTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACG  148
            .|||||.||.|||||.||.|||||.|||||.|||||||||||||||||.||||||.|||||.|.|||||.|.||
Sbjct   75  CTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCG  148

Query  149  CAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACA  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct  149  CAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACA  222

Query  223  TTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTAACAGAAGACATAACAAGATATTATTTATGTCTTCA  296
            ||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct  223  TTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGATACTATTTATGTCTTCA  296

Query  297  GCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCA  370
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||..||.|.||.||||||||.|
Sbjct  297  GCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGA  370

Query  371  TCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCG  444
            ||||||||||.|||||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.||.
Sbjct  371  TCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCA  444

Query  445  AATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGC  518
            |||||||||||||||||||||||.||||||||||||.|||||||.|||||||||||||||||||||||||||||
Sbjct  445  AATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGC  518

Query  519  TGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGG  592
            |||||||||.||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  519  TGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGG  592

Query  593  AAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGC  666
            |.|||||.||.||.||.||.||.||||||||.||.||||||||||||||||||||.|||.||||||||||||||
Sbjct  593  AGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGC  666

Query  667  TTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCA  740
            ||.|||||||||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||||||||||||||
Sbjct  667  TTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCA  740

Query  741  AGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTG  814
            |||.||.|||||||||||||||||.|||||.||.||||||||.|||||.||.||||||.|||||||.|||||||
Sbjct  741  AGAACATTATGAAAGTACCATCGGCTTCAAGCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTG  814

Query  815  TAGAACATCACACGTTTTTCAGATTGACATCTACAGACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCC  888
            |.||.|||||||||||.||||||.|.||.||||||||||||||.|||||||||||.||||||||.||.||||||
Sbjct  815  TGGAGCATCACACGTTCTTCAGACTCACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCC  888

Query  889  AAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACA  962
            |||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||
Sbjct  889  AAATTCCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACA  962

Query  963  CTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAA  1036
            |||.|||||.||||||||.||.|||||||||.|||||||||||||||||||.|||   ||.||..|||||||||
Sbjct  963  CTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCTGCT---GAGTCCACAGACCGAA  1033

Query 1037  GTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCT  1105
            |||||||||||||.|||||.||.||||||.|||||.|||||||..||||||     |.||| .||||      |
Sbjct 1034  GTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------T  1100

Query 1106  CTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCA  1179
            |    |||||||               |||..||||||.|.|||||||.|||||.|||...||.|||.|||||.
Sbjct 1101  C----AAAAAAA---------------CACCAAAGGAAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCG  1155

Query 1180  CCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTA  1253
            .||||||..||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1156  GCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAGAGACTAGATGGTGAAAACATTTA  1229

Query 1254  TATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCA  1327
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1230  TATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAAGAGATCAAAAAGCACCATGCCAGCA  1303

Query 1328  TCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCC  1401
            |||||||.||||||||||||||.|||||.||.|||||.|||||||||||.||.||.|||||.||.||||||||.
Sbjct 1304  TCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCCCAGCGAGTGGGACAAGCGCTTATCT  1377

Query 1402  ACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC-------------------------------  1444
            ||.||||||||||||||.||||||||||||||.||||||.|||                               
Sbjct 1378  ACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTGGAGATGGAGTGAAGAAAACTTCTAT  1451

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1452  CCTCCCCTCGGGAAGAAAGGTTGGTGGGCCAGAGAGTGTAAATGGCATTCGAACAGAGGAGGTGGCTACCGTGA  1525

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1526  CAAAAGGGCCATCCACCTACCCTGCCTCTGAATGGGAGTGCCCCAAACAGTCAGTAGTTCCTAGTCAGAGCCTG  1599

Query 1445  ---------------------CCACAG---------------------------------------------GA  1452
                                 ||||||                                             ||
Sbjct 1600  ATGACCACTCCGCCGGCGTCTCCACAGAGCTTTGGTTCTGGCTCCCTCTCCATAAACAGCAAGGAGGCGGAAGA  1673

Query 1453  GAAGGA--------------------------------------------------------------------  1458
            ||||||                                                                    
Sbjct 1674  GAAGGAGCAGGGGGCAGCTGGCTATCTTGATGCTGAAGAGATGCCAACAGGCCCAAGTGGGGAATGCTTAGGAG  1747

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1748  TGGAGGAACAGGCCAGTGCATTCAGTTTCCCAGTAACTCCAGCTTCCTGCCAGCTGCAACTCGGTGGGGAAAAG  1821

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1822  GCAGACAGTAGCGAAGAGCTGGGTGCAGCAGCAGAGACCCTTGAGACCCAGAGCGGATCCTTTCTTGACTCACC  1895

Query 1459  ----------------------------------------CCTCCCCTGGTGAAGACACAAACTGTCACCATCT  1492
                                                    |||||.|||||.|||||.||||||||||||||||
Sbjct 1896  TGTGGGTAACCAGTTCCCCACCCTCATTCGAAGTTTCCAGCCTCCTCTGGTAAAGACTCAAACTGTCACCATCT  1969

Query 1493  CAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACC  1566
            ||||||.||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1970  CAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACCAAGACC  2043

Query 1567  ATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAAC  1640
            |||||.|||||.||||||||||||||.||||.||.|||.|||||.|||||.|||||||||||||||||.||.||
Sbjct 2044  ATCACCTATGAAGCTGCCCAGACTGAGGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGAC  2117

Query 1641  TATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGA  1714
            .||||||||.||||||.||||.||.||.|||||.||.||.|||||||||||||||||||||||||||||.||||
Sbjct 2118  CATCACATCCGAGACCACAAGTAGTACAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGA  2191

Query 1715  CACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATC  1788
            |.||.||.||.||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||
Sbjct 2192  CCCGGATCGAGAAGAGAATTGTGATCACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATC  2265

Query 1789  AAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGA  1862
            |||||.||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||..||||
Sbjct 2266  AAGGAAGCCAAGGAGCAGCATCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGA  2339

Query 1863  TGAG  1866
            .|||
Sbjct 2340  GGAG  2343

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