Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_006538901.3
Aligned Length:
2372
Identities:
1593
Gaps:
595

Alignment

Query    1  ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGA  74
            ||||||||.|||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGA  74

Query   75  TTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACG  148
            .|||||.||.|||||.||.|||||.|||||.|||||||||||||||||.||||||.|||||.|.|||||.|.||
Sbjct   75  CTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCG  148

Query  149  CAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACA  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct  149  CAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACA  222

Query  223  TTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTAACAGAAGACATAACAAGATATTATTTATGTCTTCA  296
            ||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct  223  TTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGATACTATTTATGTCTTCA  296

Query  297  GCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCA  370
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||..||.|.||.||||||||.|
Sbjct  297  GCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGA  370

Query  371  TCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCG  444
            ||||||||||.|||||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.||.
Sbjct  371  TCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCA  444

Query  445  AATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGC  518
            |||||||||||||||||||||||.||||||||||||.|||||||.|||||||||||||||||||||||||||||
Sbjct  445  AATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGC  518

Query  519  TGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGG  592
            |||||||||.||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  519  TGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGG  592

Query  593  AAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGC  666
            |.|||||.||.||.||.||.||.||||||||.||.||||||||||||||||||||.|||.||||||||||||||
Sbjct  593  AGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGC  666

Query  667  TTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCA  740
            ||.|||||||||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||||||||||||||
Sbjct  667  TTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCA  740

Query  741  AGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTG  814
            |||.||.|||||||||||||||||.|||||.||.||||||||.|||||.||.||||||.|||||||.|||||||
Sbjct  741  AGAACATTATGAAAGTACCATCGGCTTCAAGCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTG  814

Query  815  TAGAACATCACACGTTTTTCAGATTGACATCTACAGACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCC  888
            |.||.|||||||||||.||||||.|.||.||||||||||||||.|||||||||||.||||||||.||.||||||
Sbjct  815  TGGAGCATCACACGTTCTTCAGACTCACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCC  888

Query  889  AAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACA  962
            |||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||
Sbjct  889  AAATTCCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACA  962

Query  963  CTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAA  1036
            |||.|||||.||||||||.||.|||||||||.||||||||||||||||||||||||..||.||..|||||||||
Sbjct  963  CTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAA  1036

Query 1037  GTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCT  1105
            |||||||||||||.|||||.||.||||||.|||||.|||||||..||||||     |.||| .||||      |
Sbjct 1037  GTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------T  1103

Query 1106  CTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCA  1179
            |    |||||||               |||..||||||.|.|||||||.|||||.|||...||.|||.|||||.
Sbjct 1104  C----AAAAAAA---------------CACCAAAGGAAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCG  1158

Query 1180  CCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTA  1253
            .||||||..||||||||.|||||||||||||||||||                                     
Sbjct 1159  GCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGGA-------------------------------------  1195

Query 1254  TATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCA  1327
                                      ||||||||||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1196  --------------------------AGGATTTAGACAAGAGTCAAGAAGAGATCAAAAAGCACCATGCCAGCA  1243

Query 1328  TCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCC  1401
            |||||||.||||||||||||||.|||||.||.|||||.|||||||||||.||.||.|||||.||.||||||||.
Sbjct 1244  TCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCCCAGCGAGTGGGACAAGCGCTTATCT  1317

Query 1402  ACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC-------------------------------  1444
            ||.||||||||||||||.||||||||||||||.||||||.|||                               
Sbjct 1318  ACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTGGAGATGGAGTGAAGAAAACTTCTAT  1391

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1392  CCTCCCCTCGGGAAGAAAGGTTGGTGGGCCAGAGAGTGTAAATGGCATTCGAACAGAGGAGGTGGCTACCGTGA  1465

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1466  CAAAAGGGCCATCCACCTACCCTGCCTCTGAATGGGAGTGCCCCAAACAGTCAGTAGTTCCTAGTCAGAGCCTG  1539

Query 1445  ---------------------CCACAG---------------------------------------------GA  1452
                                 ||||||                                             ||
Sbjct 1540  ATGACCACTCCGCCGGCGTCTCCACAGAGCTTTGGTTCTGGCTCCCTCTCCATAAACAGCAAGGAGGCGGAAGA  1613

Query 1453  GAAGGA--------------------------------------------------------------------  1458
            ||||||                                                                    
Sbjct 1614  GAAGGAGCAGGGGGCAGCTGGCTATCTTGATGCTGAAGAGATGCCAACAGGCCCAAGTGGGGAATGCTTAGGAG  1687

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1688  TGGAGGAACAGGCCAGTGCATTCAGTTTCCCAGTAACTCCAGCTTCCTGCCAGCTGCAACTCGGTGGGGAAAAG  1761

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1762  GCAGACAGTAGCGAAGAGCTGGGTGCAGCAGCAGAGACCCTTGAGACCCAGAGCGGATCCTTTCTTGACTCACC  1835

Query 1459  ----------------------------------------CCTCCCCTGGTGAAGACACAAACTGTCACCATCT  1492
                                                    |||||.|||||.|||||.||||||||||||||||
Sbjct 1836  TGTGGGTAACCAGTTCCCCACCCTCATTCGAAGTTTCCAGCCTCCTCTGGTAAAGACTCAAACTGTCACCATCT  1909

Query 1493  CAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACC  1566
            ||||||.||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1910  CAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACCAAGACC  1983

Query 1567  ATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAAC  1640
            |||||.|||||.||||||||||||||.||||.||.|||.|||||.|||||.|||||||||||||||||.||.||
Sbjct 1984  ATCACCTATGAAGCTGCCCAGACTGAGGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGAC  2057

Query 1641  TATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGA  1714
            .||||||||.||||||.||||.||.||.|||||.||.||.|||||||||||||||||||||||||||||.||||
Sbjct 2058  CATCACATCCGAGACCACAAGTAGTACAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGA  2131

Query 1715  CACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATC  1788
            |.||.||.||.||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||
Sbjct 2132  CCCGGATCGAGAAGAGAATTGTGATCACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATC  2205

Query 1789  AAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGA  1862
            |||||.||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||..||||
Sbjct 2206  AAGGAAGCCAAGGAGCAGCATCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGA  2279

Query 1863  TGAG  1866
            .|||
Sbjct 2280  GGAG  2283

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