Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_006538902.3
Aligned Length:
2372
Identities:
1591
Gaps:
598

Alignment

Query    1  ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGA  74
            ||||||||.|||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGA  74

Query   75  TTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACG  148
            .|||||.||.|||||.||.|||||.|||||.|||||||||||||||||.||||||.|||||.|.|||||.|.||
Sbjct   75  CTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCG  148

Query  149  CAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACA  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||
Sbjct  149  CAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACA  222

Query  223  TTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTAACAGAAGACATAACAAGATATTATTTATGTCTTCA  296
            ||||||||.||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct  223  TTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGATACTATTTATGTCTTCA  296

Query  297  GCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCA  370
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||..||.|.||.||||||||.|
Sbjct  297  GCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGA  370

Query  371  TCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCG  444
            ||||||||||.|||||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.||.
Sbjct  371  TCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCA  444

Query  445  AATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGC  518
            |||||||||||||||||||||||.||||||||||||.|||||||.|||||||||||||||||||||||||||||
Sbjct  445  AATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGC  518

Query  519  TGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGG  592
            |||||||||.||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  519  TGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGG  592

Query  593  AAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGC  666
            |.|||||.||.||.||.||.||.||||||||.||.||||||||||||||||||||.|||.||||||||||||||
Sbjct  593  AGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGC  666

Query  667  TTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCA  740
            ||.|||||||||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.||||||||||||||
Sbjct  667  TTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCA  740

Query  741  AGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTG  814
            |||.||.|||||||||||||||||.|||||.||.||||||||.|||||.||.||||||.|||||||.|||||||
Sbjct  741  AGAACATTATGAAAGTACCATCGGCTTCAAGCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTG  814

Query  815  TAGAACATCACACGTTTTTCAGATTGACATCTACAGACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCC  888
            |.||.|||||||||||.||||||.|.||.||||||||||||||.|||||||||||.||||||||.||.||||||
Sbjct  815  TGGAGCATCACACGTTCTTCAGACTCACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCC  888

Query  889  AAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACA  962
            |||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||
Sbjct  889  AAATTCCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACA  962

Query  963  CTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAA  1036
            |||.|||||.||||||||.||.|||||||||.|||||||||||||||||||.|||   ||.||..|||||||||
Sbjct  963  CTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCTGCT---GAGTCCACAGACCGAA  1033

Query 1037  GTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCT  1105
            |||||||||||||.|||||.||.||||||.|||||.|||||||..||||||     |.||| .||||      |
Sbjct 1034  GTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------T  1100

Query 1106  CTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCA  1179
            |    |||||||               |||..||||||.|.|||||||.|||||.|||...||.|||.|||||.
Sbjct 1101  C----AAAAAAA---------------CACCAAAGGAAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCG  1155

Query 1180  CCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTA  1253
            .||||||..||||||||.|||||||||||||||||||                                     
Sbjct 1156  GCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGGA-------------------------------------  1192

Query 1254  TATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCA  1327
                                      ||||||||||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1193  --------------------------AGGATTTAGACAAGAGTCAAGAAGAGATCAAAAAGCACCATGCCAGCA  1240

Query 1328  TCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCC  1401
            |||||||.||||||||||||||.|||||.||.|||||.|||||||||||.||.||.|||||.||.||||||||.
Sbjct 1241  TCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCCCAGCGAGTGGGACAAGCGCTTATCT  1314

Query 1402  ACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC-------------------------------  1444
            ||.||||||||||||||.||||||||||||||.||||||.|||                               
Sbjct 1315  ACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTGGAGATGGAGTGAAGAAAACTTCTAT  1388

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1389  CCTCCCCTCGGGAAGAAAGGTTGGTGGGCCAGAGAGTGTAAATGGCATTCGAACAGAGGAGGTGGCTACCGTGA  1462

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 1463  CAAAAGGGCCATCCACCTACCCTGCCTCTGAATGGGAGTGCCCCAAACAGTCAGTAGTTCCTAGTCAGAGCCTG  1536

Query 1445  ---------------------CCACAG---------------------------------------------GA  1452
                                 ||||||                                             ||
Sbjct 1537  ATGACCACTCCGCCGGCGTCTCCACAGAGCTTTGGTTCTGGCTCCCTCTCCATAAACAGCAAGGAGGCGGAAGA  1610

Query 1453  GAAGGA--------------------------------------------------------------------  1458
            ||||||                                                                    
Sbjct 1611  GAAGGAGCAGGGGGCAGCTGGCTATCTTGATGCTGAAGAGATGCCAACAGGCCCAAGTGGGGAATGCTTAGGAG  1684

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1685  TGGAGGAACAGGCCAGTGCATTCAGTTTCCCAGTAACTCCAGCTTCCTGCCAGCTGCAACTCGGTGGGGAAAAG  1758

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 1759  GCAGACAGTAGCGAAGAGCTGGGTGCAGCAGCAGAGACCCTTGAGACCCAGAGCGGATCCTTTCTTGACTCACC  1832

Query 1459  ----------------------------------------CCTCCCCTGGTGAAGACACAAACTGTCACCATCT  1492
                                                    |||||.|||||.|||||.||||||||||||||||
Sbjct 1833  TGTGGGTAACCAGTTCCCCACCCTCATTCGAAGTTTCCAGCCTCCTCTGGTAAAGACTCAAACTGTCACCATCT  1906

Query 1493  CAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACC  1566
            ||||||.||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1907  CAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGATGTCCCTATTGTCCACACTGAGACCAAGACC  1980

Query 1567  ATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAAC  1640
            |||||.|||||.||||||||||||||.||||.||.|||.|||||.|||||.|||||||||||||||||.||.||
Sbjct 1981  ATCACCTATGAAGCTGCCCAGACTGAGGACAGCAATGGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGAC  2054

Query 1641  TATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGA  1714
            .||||||||.||||||.||||.||.||.|||||.||.||.|||||||||||||||||||||||||||||.||||
Sbjct 2055  CATCACATCCGAGACCACAAGTAGTACAACCACGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGA  2128

Query 1715  CACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATC  1788
            |.||.||.||.||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||
Sbjct 2129  CCCGGATCGAGAAGAGAATTGTGATCACAGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATC  2202

Query 1789  AAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGA  1862
            |||||.||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||..||||
Sbjct 2203  AAGGAAGCCAAGGAGCAGCATCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGA  2276

Query 1863  TGAG  1866
            .|||
Sbjct 2277  GGAG  2280

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.