Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10801
Subject:
XM_017320239.1
Aligned Length:
3059
Identities:
1655
Gaps:
1219

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGACAACAGAGAAGAGTTTAGCGGCTGAAGCTGAGAATTCTCAGCACCAGCAACAGAAGGAAGAAGGAGAGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCACAAACTCAGGCCAACAAGAAACTCAGCTGGAGGAGGCCTCCCAAGCGGCCGCAGCTGAGGGCAGCGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGGTGAGCAGAAGCTGAAAGCATCCAATGGGGACACTCCAACACATGAAGACTTGACCAAGAACAAGGAACGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATCAGAAAGCAGAGGCCTGTCACGACTGCTCTCCTCATTCCTCAAAAGGCCCAAGTCGCAGGTCTCTGAAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAAGGCAGAGAAGTAGAATCAGAGAAAGAGAAAGGTGAAGGGGGTCAGAAGGAGATAGAACTTGGAAACAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTGATGAAGACATCATTTTAAAGGCCCCCATTGCAGCTCCTGAACCTGAGCTCAAAACAGACCCATCTTTGGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTTCATTCATTAAGCAGTATAGAGACACAGCCAGCTCAGGAAGAACACAGAGAGGACCCAGATTCTGAAACGAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAAGGAGAAGGGATTGAAGAGTGCTCTGGAACAGAGGTGAAAGAGGACCCAGAGTCAAGAGCAGAGAGAGAAC  592

Query    1  --------------------------------------ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTT  36
                                                  ||||||||.|||||.||.||||||||||||||.||.
Sbjct  593  CCGAAGCCTCCCAGAAGCCCGTCAGAAGACACAGAAACATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTC  666

Query   37  TATGAATGTGTTGTGGAGAAACATGCTAAGGGACAAGATTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTT  110
            ||.|||||||||||.|||||||||||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||
Sbjct  667  TACGAATGTGTTGTAGAGAAACATGCTAAGGGACAAGACTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTT  740

Query  111  GGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACGCAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAA  184
            ||||||||||||.||||||.|||||.|.|||||.|.|||||||||||||||||||||||||||.||||||||||
Sbjct  741  GGAAGAAGACTACTTTGGTTTAGCCCTGTGGGACAGCGCAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAA  814

Query  185  TAAAAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACATTTAATGTAAAGTTTTATCCACCTGACCCAGCACAG  258
            ||||||||||||||||.|||||.|||||||||||.|||||||||||.||||||||||||||.|||||||||||.
Sbjct  815  TAAAAAAGCAGGTTCGAGGTGTTCCTTGGAATTTCACATTTAATGTGAAGTTTTATCCACCCGACCCAGCACAA  888

Query  259  TTAACAGAAGACATAACAAGATATTATTTATGTCTTCAGCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTG  332
            |||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct  889  TTAACAGAAGACATAACAAGATACTATTTATGTCTTCAGCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTG  962

Query  333  TTCCTTTGCAACCTTAGCATTATTAGGTTCTTACACCATCCAGTCTGAACTGGGAGACTACGACCCAGAACTCC  406
            ||||||||||||.|||||..||.|.||.||||||||.|||||||||||.|||||||||||.|||||||||||.|
Sbjct  963  TTCCTTTGCAACTTTAGCCCTACTCGGGTCTTACACGATCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGC  1036

Query  407  ATGGCGTGGATTATGTTAGTGATTTTAAACTGGCCCCGAATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAA  480
            |.|||.||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||||||
Sbjct 1037  ACGGCATGGATTATGTTAGTGATTTTAAACTGGCTCCAAATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAA  1110

Query  481  CTGCATAAGTCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTC  554
            .|||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1111  TTGCATAAATCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTC  1184

Query  555  TATGTATGGAGTTGATCTTCATAAAGCAAAGGACTTGGAAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTG  628
            .||||||||||||||||||||.|||||||||||||||||.|||||.||.||.||.||.||.||||||||.||.|
Sbjct 1185  CATGTATGGAGTTGATCTTCACAAAGCAAAGGACTTGGAGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCG  1258

Query  629  GCCTTCTGGTTTACAAAGATAAGCTGAGAATTAACCGCTTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAA  702
            |||||||||||||||||||.|||.||||||||||||||||.|||||||||||||||||.|||||||||||.|||
Sbjct 1259  GCCTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGCTTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACAAA  1332

Query  703  CGTAGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCAAGAGCAGTATGAAAGTACCATCGGATTCAAACTTCC  776
            ||.||.|||||.|||||||||||.|||||||||||||||||.||.|||||||||||||||||.|||||.||.||
Sbjct 1333  CGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCAAGAACATTATGAAAGTACCATCGGCTTCAAGCTCCC  1406

Query  777  CAGTTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTGTAGAACATCACACGTTTTTCAGATTGACATCTACAG  850
            ||||||.|||||.||.||||||.|||||||.||||||||.||.|||||||||||.||||||.|.||.|||||||
Sbjct 1407  CAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTGTGGAGCATCACACGTTCTTCAGACTCACCTCTACAG  1480

Query  851  ACACCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACC  924
            |||||||.|||||||||||.||||||||.||.|||||||||||.||||||||||||||||||||||||||||||
Sbjct 1481  ACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCCAAATTCCGATACAGTGGCCGGACTCAAGCTCAGACC  1554

Query  925  AGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAG  998
            ||||||||.|||||.||.||||||||||||||.||||||||.|||||.||||||||.||.|||||||||.||||
Sbjct 1555  AGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACACTTTGAGCGGACAGCAAGCAAGCGGGCGTCCAGGAG  1628

Query  999  CCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGG  1072
            ||||||||||||||||||||..||.||..||||||||||||||||||||||.|||||.||.||||||.|||||.
Sbjct 1629  CCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAAGTCCTCGGCCCACCTCTGCCCCAGCCATTGCTCAGA  1702

Query 1073  GTCAGGTTGCAGAAG-----GTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG  1141
            |||||||..||||||     |.||| .||||      ||    |||||||               |||..||||
Sbjct 1703  GTCAGGTCACAGAAGGGCCAGGGGC-ACCTA------TC----AAAAAAA---------------CACCAAAGG  1750

Query 1142  AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGG  1215
            ||.|.|||||||.|||||.|||...||.|||.|||||..||||||..||||||||.||||||||||||||||||
Sbjct 1751  AAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCGGCTGAGCCCGCTGAGCCGGAGCCCACAGAAGCATGG  1824

Query 1216  A---------------------------------------------------------AGAAAAAGAGAGAAAG  1232
            |                                                         |||||||||||||.||
Sbjct 1825  AAGGTGGAAAAAACCCACACCGAGGTCACAGTACCTACCTCAAATGGTGACCAAACGCAGAAAAAGAGAGAGAG  1898

Query 1233  ACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGA  1306
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1899  ACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAAGAGA  1972

Query 1307  TCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGT  1380
            |||||||.||.|||||||||||||||||.||||||||||||||.|||||.||.|||||.|||||||||||.||.
Sbjct 1973  TCAAAAAGCACCATGCCAGCATCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCCCAGC  2046

Query 1381  GAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC----------  1444
            ||.|||||.||.||||||||.||.||||||||||||||.||||||||||||||.||||||.|||          
Sbjct 2047  GAGTGGGACAAGCGCTTATCTACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTGGAGA  2120

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 2121  TGGAGTGAAGAAAACTTCTATCCTCCCCTCGGGAAGAAAGGTTGGTGGGCCAGAGAGTGTAAATGGCATTCGAA  2194

Query 1445  --------------------------------------------------------------------------  1444
                                                                                      
Sbjct 2195  CAGAGGAGGTGGCTACCGTGACAAAAGGGCCATCCACCTACCCTGCCTCTGAATGGGAGTGCCCCAAACAGTCA  2268

Query 1445  ------------------------------------------CCACAG--------------------------  1450
                                                      ||||||                          
Sbjct 2269  GTAGTTCCTAGTCAGAGCCTGATGACCACTCCGCCGGCGTCTCCACAGAGCTTTGGTTCTGGCTCCCTCTCCAT  2342

Query 1451  -------------------GAGAAGGA-----------------------------------------------  1458
                               ||||||||                                               
Sbjct 2343  AAACAGCAAGGAGGCGGAAGAGAAGGAGCAGGGGGCAGCTGGCTATCTTGATGCTGAAGAGATGCCAACAGGCC  2416

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 2417  CAAGTGGGGAATGCTTAGGAGTGGAGGAACAGGCCAGTGCATTCAGTTTCCCAGTAACTCCAGCTTCCTGCCAG  2490

Query 1459  --------------------------------------------------------------------------  1458
                                                                                      
Sbjct 2491  CTGCAACTCGGTGGGGAAAAGGCAGACAGTAGCGAAGAGCTGGGTGCAGCAGCAGAGACCCTTGAGACCCAGAG  2564

Query 1459  -------------------------------------------------------------CCTCCCCTGGTGA  1471
                                                                         |||||.|||||.|
Sbjct 2565  CGGATCCTTTCTTGACTCACCTGTGGGTAACCAGTTCCCCACCCTCATTCGAAGTTTCCAGCCTCCTCTGGTAA  2638

Query 1472  AGACACAAACTGTCACCATCTCAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATT  1545
            ||||.||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2639  AGACTCAAACTGTCACCATCTCAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGATGTCCCTATT  2712

Query 1546  GTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGG  1619
            ||||||||||||||||||||||||||.|||||.||||||||||||||.||||.||.|||.|||||.|||||.||
Sbjct 2713  GTCCACACTGAGACCAAGACCATCACCTATGAAGCTGCCCAGACTGAGGACAGCAATGGGGACTTAGACCCTGG  2786

Query 1620  AGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTG  1693
            |||||||||||||||.||.||.||||||||.||||||.||||.||.||.|||||.||.||.|||||||||||||
Sbjct 2787  AGTCTTGCTGACAGCCCAGACCATCACATCCGAGACCACAAGTAGTACAACCACGACACAGATTACCAAGACTG  2860

Query 1694  TAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGAT  1767
            ||||||||||||||||.|||||.||.||.||.||||||||||||||||||||||||||.|||||.|||||||||
Sbjct 2861  TAAAAGGTGGGATTTCTGAGACCCGGATCGAGAAGAGAATTGTGATCACAGGAGATGCCGATATCGACCATGAT  2934

Query 1768  CAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCA  1841
            ||||||||||||||||||||||||||.||.|||||||||||.||||||||||||||||||||||||||||||||
Sbjct 2935  CAGGTCCTTGTACAAGCCATCAAGGAAGCCAAGGAGCAGCATCCAGACATGTCAGTGACCAAGGTGGTCGTCCA  3008

Query 1842  CCAGGAGACCGAGATTGCTGATGAG  1866
            |||||||||.|||||..||||.|||
Sbjct 3009  CCAGGAGACAGAGATCTCTGAGGAG  3033

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