Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10815
Subject:
NM_010166.3
Aligned Length:
1630
Identities:
1369
Gaps:
122

Alignment

Query    1  ATGGAAGAAGAGCAAGATTTACCAGAGCAACCAGTGAAAAAAGCCAAGATGCAGGAATCAGGAGAGCAAACTAT  74
                                                            |||||||||.||.||||.||.|||.|
Sbjct    1  ------------------------------------------------ATGCAGGAACCAAGAGAACAGACTTT  26

Query   75  AAGTCAAGTAAGCAATCCAGATGTCAGTGATCAGAAGCCTGAAACATCAAGCCTTGCTTCAAACCTTCCCATGT  148
            |||||||||||.|||.|||||||.|||||||.||||||||||.|||||.||||||||.|||||.||...|||||
Sbjct   27  AAGTCAAGTAAACAACCCAGATGCCAGTGATGAGAAGCCTGAGACATCCAGCCTTGCGTCAAATCTCAGCATGT  100

Query  149  CAGAGGAAATTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  101  CAGAGGAAATTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCA  174

Query  223  AAACCTTATGCACATATTCTCTCAGTTCCTGTTTCGGAAACTGCTTACCCTGGACAGACTCAATACCAGACACT  296
            ||||||||||||||.||.|||||||||||||||||||||||..||||.|||||.||||||||.|||||||||||
Sbjct  175  AAACCTTATGCACACATCCTCTCAGTTCCTGTTTCGGAAACCACTTATCCTGGGCAGACTCAGTACCAGACACT  248

Query  297  ACAGCAGACTCAACCCTATGCTGTCTACCCTCAGGCAACCCAAACGTATGGACTACCTCCTTTTGCTTCAAGCA  370
            .|||||..||||||||||.||||||||||||||||||||||||||.||.||||||||||||||.||||||||||
Sbjct  249  GCAGCAATCTCAACCCTACGCTGTCTACCCTCAGGCAACCCAAACTTACGGACTACCTCCTTTCGCTTCAAGCA  322

Query  371  CAAATGCCAGCCTGATATCTACTTCTTCTACAATTGCCAATATTCCAGCAGCAGCAGTAGCCAGCATCTCAAAC  444
            |||||||||||||||||.|.|||||.|||.|||||||||||||||||||||||||.||.|||||||||||||||
Sbjct  323  CAAATGCCAGCCTGATACCCACTTCATCTGCAATTGCCAATATTCCAGCAGCAGCTGTGGCCAGCATCTCAAAC  396

Query  445  CAGGATTATCCCACCTATACTATTCTTGGTCAGAATCAGTACCAGGCCTGCTACCCCAGCTCCAGCTTTGGAGT  518
            |||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||||||
Sbjct  397  CAGGATTATCCCACCTATACTATTCTTGGACAGAATCAGTACCAGGCCTGCTACCCCAGTTCCAGCTTTGGAGT  470

Query  519  CACAGGTCAGACTAACAGTGATGCAGAGAGCACCACATTAGCAGCAACCACATACCAGTCGGAGAAGCCTAGTG  592
            ||||||||||||||||||||||||.||||.|||.|||||||||||.||.|||||||||.|||||||||||||||
Sbjct  471  CACAGGTCAGACTAACAGTGATGCTGAGACCACAACATTAGCAGCTACAACATACCAGACGGAGAAGCCTAGTG  544

Query  593  TCATGGCGCCTGCACCTGCAGCACAGAGACTTTCCTCTGGAGACCCTTCTACAAGTCCATCTTTGTCCCAGACT  666
            ..||||.|||||||||.||..|||||||.|||.||||   .|||.|.|||.||||.|||.||||||||||||||
Sbjct  545  CTATGGTGCCTGCACCAGCCACACAGAGGCTTCCCTC---CGACTCCTCTGCAAGCCCACCTTTGTCCCAGACT  615

Query  667  ACACCAAGTAAAGATACTGATGATCAGTCCAGGAAAAACATGACTAGCAAGAACCGGGGCAAGAGGAAAGCTGA  740
            |||||||.|||||||.|||||||||||.|||||||||||||||||..|||||||||||||||||||||||||||
Sbjct  616  ACACCAAATAAAGATGCTGATGATCAGGCCAGGAAAAACATGACTGTCAAGAACCGGGGCAAGAGGAAAGCTGA  689

Query  741  TGCCACTTCTTCCCAAGACAGTGAATTAGAACGGGTATTTCTGTGGGACTTGGATGAAACCATCATCATCTTCC  814
            |||||..||||||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||||||||||.|
Sbjct  690  TGCCAGCTCTTCCCAGGACAGTGAATTGGAACGGGTATTTCTCTGGGACTTGGACGAAACCATCATCATCTTTC  763

Query  815  ACTCACTTCTTACTGGATCCTATGCCCAGAAATATGGAAAGGACCCAACAGTAGTGATTGGCTCAGGTTTAACA  888
            |.||.|||||.||||||||||||||.|||||.|||||||||||||||||||||||.|||||||||||||||||.
Sbjct  764  ATTCCCTTCTCACTGGATCCTATGCTCAGAAGTATGGAAAGGACCCAACAGTAGTAATTGGCTCAGGTTTAACC  837

Query  889  ATGGAAGAAATGATTTTTGAAGTGGCTGATACTCATCTATTTTTCAATGACTTAGAGGAGTGTGACCAGGTACA  962
            ||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||
Sbjct  838  ATGGAAGAAATGATTTTTGAAGTGGCTGATACACATCTATTTTTCAATGACTTAGAGGAGTGTGACCAGGTGCA  911

Query  963  TGTGGAAGATGTGGCTTCTGATGACAATGGCCAAGACTTGAGCAACTACAGTTTCTCAACAGATGGTTTCAGTG  1036
            |||||||||||||||||||||||||||||||||.||.||||||||||||||||||||.||||||||||||||||
Sbjct  912  TGTGGAAGATGTGGCTTCTGATGACAATGGCCAGGATTTGAGCAACTACAGTTTCTCCACAGATGGTTTCAGTG  985

Query 1037  GCTCAGGAGGTAGTGGCAGCCATGGTTCATCTGTGGGTGTTCAGGGAGGTGTGGACTGGATGAGGAAACTAGCT  1110
            |.||||||||.|||||.|||||.||.|||||||||||.||||||||||||||||||||||||||||||||.||.
Sbjct  986  GTTCAGGAGGCAGTGGTAGCCACGGCTCATCTGTGGGCGTTCAGGGAGGTGTGGACTGGATGAGGAAACTGGCC  1059

Query 1111  TTCCGCTACCGGAAAGTGAGAGAAATCTATGATAAGCATAAAAGCAACGTGGGTGGTCTCCTCAGTCCCCAGAG  1184
            ||.||||||||.||||||||.||||||||.||.||||||||||||||.||||||||.||||||||.||||||||
Sbjct 1060  TTTCGCTACCGAAAAGTGAGGGAAATCTACGACAAGCATAAAAGCAATGTGGGTGGCCTCCTCAGCCCCCAGAG  1133

Query 1185  GAAGGAAGCACTGCAGAGATTAAGAGCAGAAATTGAAGTTTTAACAGATTCCTGGTTAGGAACTGCATTAAAGT  1258
            |||||||||||||||||||.|.||||||||.||.||.||..|.||.||.|||||||||||||||||..|.||||
Sbjct 1134  GAAGGAAGCACTGCAGAGACTCAGAGCAGAGATCGAGGTGCTGACGGACTCCTGGTTAGGAACTGCGCTCAAGT  1207

Query 1259  CCTTACTTCTCATCCAGTCCAGAAAGAATTGTGTGAATGTTCTGATCACTACCACCCAGCTGGTTCCAGCCCTG  1332
            ||||.||||||||||||||..|||||||.||||.|||||||||||||||||||||.|||.||||||||||||||
Sbjct 1208  CCTTGCTTCTCATCCAGTCTCGAAAGAACTGTGCGAATGTTCTGATCACTACCACGCAGTTGGTTCCAGCCCTG  1281

Query 1333  GCCAAGGTTCTCCTATATGGACTAGGAGAAATATTTCCTATTGAGAACATCTATAGTGCTACCAAAATTGGTAA  1406
            ||||||||||||||.||||||||||||||.||||||||||||||.||||||||.||||||||||||||.|||||
Sbjct 1282  GCCAAGGTTCTCCTGTATGGACTAGGAGAGATATTTCCTATTGAAAACATCTACAGTGCTACCAAAATCGGTAA  1355

Query 1407  GGAGAGCTGCTTTGAGAGAATTGTGTCAAGGTTTGGAAAGAAAGTCACATATGTAGTGATTGGAGATGGACGAG  1480
            ||||||||||||||||||||||||.||.||||||||.||.||||||||||||||||||||||||||||||||||
Sbjct 1356  GGAGAGCTGCTTTGAGAGAATTGTTTCGAGGTTTGGGAAAAAAGTCACATATGTAGTGATTGGAGATGGACGAG  1429

Query 1481  ATGAAGAAATTGCAGCCAAACAG--CAACTCTAT----TTCTTAGA-----------CATGGAGGCAT-TGGGT  1536
            |||||||||||||||||||.|||  ||||   ||    ||| |.||           ||.||||  || |||..
Sbjct 1430  ATGAAGAAATTGCAGCCAAGCAGCACAAC---ATGCCCTTC-TGGAGGATCACAAACCACGGAG--ATCTGGTG  1497

Query 1537  TGCCAGCTAGAACCAACTGCCCTGATA-CT---CTTCATCCAGTTAAGTGGAAACCTTAGCAACTATAATAAAC  1606
            |.||.||    ||||   |.|.|.|.| ||   ||||.||                                  
Sbjct 1498  TCCCTGC----ACCA---GGCTTTAGAGCTTGACTTCCTC----------------------------------  1530

Query 1607  TA  1608
              
Sbjct 1531  --  1530

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