Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10815
Subject:
XM_006538538.3
Aligned Length:
1768
Identities:
1369
Gaps:
260

Alignment

Query    1  ATGGAAGAAGAGCAAGATTTACCAGAGCAACCAGTGAAAAAAGCCAAGATGCAGGAATCAGGAGAGCAAACTAT  74
                                                            |||||||||.||.||||.||.|||.|
Sbjct    1  ------------------------------------------------ATGCAGGAACCAAGAGAACAGACTTT  26

Query   75  AAGTCAAGTAAGCAATCCAGATGTCAGTGATCAGAAGCCTGAAACATCAAGCCTTGCTTCAAACCTTCCCATGT  148
            |||||||||||.|||.|||||||.|||||||.||||||||||.|||||.||||||||.|||||.||...|||||
Sbjct   27  AAGTCAAGTAAACAACCCAGATGCCAGTGATGAGAAGCCTGAGACATCCAGCCTTGCGTCAAATCTCAGCATGT  100

Query  149  CAGAGGAAATTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  101  CAGAGGAAATTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCA  174

Query  223  AAACCTTATGCACATATTCTCTCAGTTCCTGTTTCGGAAACTGCTTACCCTGGACAGACTCAATACCAGACACT  296
            ||||||||||||||.||.|||||||||||||||||||||||..||||.|||||.||||||||.|||||||||||
Sbjct  175  AAACCTTATGCACACATCCTCTCAGTTCCTGTTTCGGAAACCACTTATCCTGGGCAGACTCAGTACCAGACACT  248

Query  297  ACAGCAGACTCAACCCTATGCTGTCTACCCTCAGGCAACCCAAACGTATGGACTACCTCCTTT-----------  359
            .|||||..||||||||||.||||||||||||||||||||||||||.||.||||||||||||||           
Sbjct  249  GCAGCAATCTCAACCCTACGCTGTCTACCCTCAGGCAACCCAAACTTACGGACTACCTCCTTTCGGTGCACTGT  322

Query  360  --------------------------------------------------------------------------  359
                                                                                      
Sbjct  323  GGCCAGGTATGAAACCTGAAAGTGGTTTAATTCAGACTCCATCTCCAAGTCAACACAGTGTTCTTACCTGCACT  396

Query  360  -----------------------------------------------------TGCTTCAAGCACAAATGCCAG  380
                                                                 .||||||||||||||||||||
Sbjct  397  ACAGGGTTAACCACAAGCCAGCCAAGCTCAGCACATTATTCTTATCCCATTCAAGCTTCAAGCACAAATGCCAG  470

Query  381  CCTGATATCTACTTCTTCTACAATTGCCAATATTCCAGCAGCAGCAGTAGCCAGCATCTCAAACCAGGATTATC  454
            |||||||.|.|||||.|||.|||||||||||||||||||||||||.||.|||||||||||||||||||||||||
Sbjct  471  CCTGATACCCACTTCATCTGCAATTGCCAATATTCCAGCAGCAGCTGTGGCCAGCATCTCAAACCAGGATTATC  544

Query  455  CCACCTATACTATTCTTGGTCAGAATCAGTACCAGGCCTGCTACCCCAGCTCCAGCTTTGGAGTCACAGGTCAG  528
            |||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct  545  CCACCTATACTATTCTTGGACAGAATCAGTACCAGGCCTGCTACCCCAGTTCCAGCTTTGGAGTCACAGGTCAG  618

Query  529  ACTAACAGTGATGCAGAGAGCACCACATTAGCAGCAACCACATACCAGTCGGAGAAGCCTAGTGTCATGGCGCC  602
            ||||||||||||||.||||.|||.|||||||||||.||.|||||||||.|||||||||||||||..||||.|||
Sbjct  619  ACTAACAGTGATGCTGAGACCACAACATTAGCAGCTACAACATACCAGACGGAGAAGCCTAGTGCTATGGTGCC  692

Query  603  TGCACCTGCAGCACAGAGACTTTCCTCTGGAGACCCTTCTACAAGTCCATCTTTGTCCCAGACTACACCAAGTA  676
            ||||||.||..|||||||.|||.||||   .|||.|.|||.||||.|||.|||||||||||||||||||||.||
Sbjct  693  TGCACCAGCCACACAGAGGCTTCCCTC---CGACTCCTCTGCAAGCCCACCTTTGTCCCAGACTACACCAAATA  763

Query  677  AAGATACTGATGATCAGTCCAGGAAAAACATGACTAGCAAGAACCGGGGCAAGAGGAAAGCTGATGCCACTTCT  750
            |||||.|||||||||||.|||||||||||||||||..||||||||||||||||||||||||||||||||..|||
Sbjct  764  AAGATGCTGATGATCAGGCCAGGAAAAACATGACTGTCAAGAACCGGGGCAAGAGGAAAGCTGATGCCAGCTCT  837

Query  751  TCCCAAGACAGTGAATTAGAACGGGTATTTCTGTGGGACTTGGATGAAACCATCATCATCTTCCACTCACTTCT  824
            |||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||||||||||.||.||.|||||
Sbjct  838  TCCCAGGACAGTGAATTGGAACGGGTATTTCTCTGGGACTTGGACGAAACCATCATCATCTTTCATTCCCTTCT  911

Query  825  TACTGGATCCTATGCCCAGAAATATGGAAAGGACCCAACAGTAGTGATTGGCTCAGGTTTAACAATGGAAGAAA  898
            .||||||||||||||.|||||.|||||||||||||||||||||||.|||||||||||||||||.||||||||||
Sbjct  912  CACTGGATCCTATGCTCAGAAGTATGGAAAGGACCCAACAGTAGTAATTGGCTCAGGTTTAACCATGGAAGAAA  985

Query  899  TGATTTTTGAAGTGGCTGATACTCATCTATTTTTCAATGACTTAGAGGAGTGTGACCAGGTACATGTGGAAGAT  972
            ||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  986  TGATTTTTGAAGTGGCTGATACACATCTATTTTTCAATGACTTAGAGGAGTGTGACCAGGTGCATGTGGAAGAT  1059

Query  973  GTGGCTTCTGATGACAATGGCCAAGACTTGAGCAACTACAGTTTCTCAACAGATGGTTTCAGTGGCTCAGGAGG  1046
            |||||||||||||||||||||||.||.||||||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 1060  GTGGCTTCTGATGACAATGGCCAGGATTTGAGCAACTACAGTTTCTCCACAGATGGTTTCAGTGGTTCAGGAGG  1133

Query 1047  TAGTGGCAGCCATGGTTCATCTGTGGGTGTTCAGGGAGGTGTGGACTGGATGAGGAAACTAGCTTTCCGCTACC  1120
            .|||||.|||||.||.|||||||||||.||||||||||||||||||||||||||||||||.||.||.|||||||
Sbjct 1134  CAGTGGTAGCCACGGCTCATCTGTGGGCGTTCAGGGAGGTGTGGACTGGATGAGGAAACTGGCCTTTCGCTACC  1207

Query 1121  GGAAAGTGAGAGAAATCTATGATAAGCATAAAAGCAACGTGGGTGGTCTCCTCAGTCCCCAGAGGAAGGAAGCA  1194
            |.||||||||.||||||||.||.||||||||||||||.||||||||.||||||||.||||||||||||||||||
Sbjct 1208  GAAAAGTGAGGGAAATCTACGACAAGCATAAAAGCAATGTGGGTGGCCTCCTCAGCCCCCAGAGGAAGGAAGCA  1281

Query 1195  CTGCAGAGATTAAGAGCAGAAATTGAAGTTTTAACAGATTCCTGGTTAGGAACTGCATTAAAGTCCTTACTTCT  1268
            |||||||||.|.||||||||.||.||.||..|.||.||.|||||||||||||||||..|.||||||||.|||||
Sbjct 1282  CTGCAGAGACTCAGAGCAGAGATCGAGGTGCTGACGGACTCCTGGTTAGGAACTGCGCTCAAGTCCTTGCTTCT  1355

Query 1269  CATCCAGTCCAGAAAGAATTGTGTGAATGTTCTGATCACTACCACCCAGCTGGTTCCAGCCCTGGCCAAGGTTC  1342
            |||||||||..|||||||.||||.|||||||||||||||||||||.|||.||||||||||||||||||||||||
Sbjct 1356  CATCCAGTCTCGAAAGAACTGTGCGAATGTTCTGATCACTACCACGCAGTTGGTTCCAGCCCTGGCCAAGGTTC  1429

Query 1343  TCCTATATGGACTAGGAGAAATATTTCCTATTGAGAACATCTATAGTGCTACCAAAATTGGTAAGGAGAGCTGC  1416
            ||||.||||||||||||||.||||||||||||||.||||||||.||||||||||||||.|||||||||||||||
Sbjct 1430  TCCTGTATGGACTAGGAGAGATATTTCCTATTGAAAACATCTACAGTGCTACCAAAATCGGTAAGGAGAGCTGC  1503

Query 1417  TTTGAGAGAATTGTGTCAAGGTTTGGAAAGAAAGTCACATATGTAGTGATTGGAGATGGACGAGATGAAGAAAT  1490
            ||||||||||||||.||.||||||||.||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504  TTTGAGAGAATTGTTTCGAGGTTTGGGAAAAAAGTCACATATGTAGTGATTGGAGATGGACGAGATGAAGAAAT  1577

Query 1491  TGCAGCCAAACAG--CAACTCTAT----TTCTTAGA-----------CATGGAGGCAT-TGGGTTGCCAGCTAG  1546
            |||||||||.|||  ||||   ||    ||| |.||           ||.||||  || |||..|.||.||   
Sbjct 1578  TGCAGCCAAGCAGCACAAC---ATGCCCTTC-TGGAGGATCACAAACCACGGAG--ATCTGGTGTCCCTGC---  1642

Query 1547  AACCAACTGCCCTGATA-CT---CTTCATCCAGTTAAGTGGAAACCTTAGCAACTATAATAAACTA  1608
             ||||   |.|.|.|.| ||   ||||.||                                    
Sbjct 1643  -ACCA---GGCTTTAGAGCTTGACTTCCTC------------------------------------  1668

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