Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11020
- Subject:
- NM_001352646.2
- Aligned Length:
- 6000
- Identities:
- 1471
- Gaps:
- 4527
Alignment
Query 1 ATGGCCACAGGAGGAGGTCCCTTTGAAGATGGCATGAATGATCAGGATTTACCAAACTGGAGTAATGAGAATGT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCACAGGAGGAGGTCCCTTTGAAGATGGCATGAATGATCAGGATTTACCAAACTGGAGTAATGAGAATGT 74
Query 75 TGATGACAGGCTCAACAATATGGATTGGGGTGCCCAACAGAAGAAAGCAAATAGATCATCAGAAAAGAATAAGA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGATGACAGGCTCAACAATATGGATTGGGGTGCCCAACAGAAGAAAGCAAATAGATCATCAGAAAAGAATAAGA 148
Query 149 AAAAGTTTGGTGTAGAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTCGTCACCAGGAGTTGGAAGG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AAAAGTTTGGTGTAGAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTCGTCACCAGGAGTTGGAAGG 222
Query 223 CGAAGAACAAAGACTCCACATACGTTCCCACACAGTAGATACATGAGTCAGATGTCTGTCCCAGAGCAGGCAGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CGAAGAACAAAGACTCCACATACGTTCCCACACAGTAGATACATGAGTCAGATGTCTGTCCCAGAGCAGGCAGA 296
Query 297 ATTAGAGAAACTGAAACAGCGGATAAACTTCAGTGATTTAGATCAGAGAAGCATTGGAAGTGATTCCCAAGGTA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATTAGAGAAACTGAAACAGCGGATAAACTTCAGTGATTTAGATCAGAGAAGCATTGGAAGTGATTCCCAAGGTA 370
Query 371 GAGCAACAGCTGCTAACAACAAACGTCAGCTTAGTGAAAACCGAAAGCCCTTCAACTTTTTGCCTATGCAGATT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGCAACAGCTGCTAACAACAAACGTCAGCTTAGTGAAAACCGAAAGCCCTTCAACTTTTTGCCTATGCAGATT 444
Query 445 AATACTAACAAGAGCAAAGATGCATCTACAAGTCCCCCAAACAGAGAAACGATTGGATCAGCACAGTGTAAAGA 518
|||||||||||||||||||||||||||||||..|||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AATACTAACAAGAGCAAAGATGCATCTACAAACCCCCCAAACAGAGAAACGATTGGATCAGCACAGTGTAAAGA 518
Query 519 GTTGTTTGCTTCTGCTTTAAGTAATGACCTCTTGCAAAACTGTCAGGTGTCTGAAGAAGATGGGAGGGGAGAAC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GTTGTTTGCTTCTGCTTTAAGTAATGACCTCTTGCAAAACTGTCAGGTGTCTGAAGAAGATGGGAGGGGAGAAC 592
Query 593 CTGCAATGGAGAGCAGCCAGATTGTAAGCAGGCTTGTTCAAATTCGCGATTATATTACTAAAGCTAGTTCCATG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGCAATGGAGAGCAGCCAGATTGTAAGCAGGCTTGTTCAAATTCGCGATTATATTACTAAAGCTAGTTCCATG 666
Query 667 CGGGAAGATCTTGTAGAGAAAAATGAGAGATCTGCTAATGTTGAGCGCCTTACTCATCTAATAGATCACCTTAA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CGGGAAGATCTTGTAGAGAAAAATGAGAGATCTGCTAATGTTGAGCGCCTTACTCATCTAATAGATCACCTTAA 740
Query 741 AGAACAAGAGAAGTCATATATGAAATTTCTTAAAAAAATCCTTGCTAGAGAAAATGAGGAGGAGGATGTTCGGA 814
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGAACAAGAGAAGTCATATATGAAATTTCTTAAAAAAATCCTT------------------------------- 783
Query 815 CTATAGATTCAGCTGTGGGATCTGGTTCTGTAGCTGAGAGCACATCGCTAAACATAGATGTGCAGTCTGAGGCT 888
Sbjct 784 -------------------------------------------------------------------------- 783
Query 889 TCAGATACCACGGCCAGAGATCCTCAGCAGGAGCCTATGGAAGAGATAGAAAATTTGAAGAAACAACATGATTT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ------------GCCAGAGATCCTCAGCAGGAGCCTATGGAAGAGATAGAAAATTTGAAGAAACAACATGATTT 845
Query 963 ATTAAAAAGAATGTTACAACAGCAGGAGCAACTAAGAGCTCTACAGGGACGGCAGGCTGCACTTCTAGCTCTGC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATTAAAAAGAATGTTACAACAGCAGGAGCAACTAAGAGCTCTACAGGGACGGCAGGCTGCACTTCTAGCTCTGC 919
Query 1037 AACATAAAGCAGAGCAAGCTATTGCAGTGATGGATGATTCTGTTGTTGCAGAAACTGCAGGTAGCTTATCTGGC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AACATAAAGCAGAGCAAGCTATTGCAGTGATGGATGATTCTGTTGTTGCAGAAACTGCAGGTAGCTTATCTGGC 993
Query 1111 GTCAGTATCACATCTGAACTAAATGAAGAATTGAATGACTTAATTCAGCGTTTTCATAATCAGCTTCGTGATTC 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GTCAGTATCACATCTGAACTAAATGAAGAATTGAATGACTTAATTCAGCGTTTTCATAATCAGCTTCGTGATTC 1067
Query 1185 TCAGCCTCCAGCTGTTCCAGACAATAGAAGACAGGCAGAAAGTCTTTCATTAACTAGGGAGGTTTCCCAGAGCA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TCAGCCTCCAGCTGTTCCAGACAATAGAAGACAGGCAGAAAGTCTTTCATTAACTAGGGAGGTTTCCCAGAGCA 1141
Query 1259 GGAAACCATCAGCTTCAGAACGTTTACCTGATGAGAAAGTCGAACTTTTTAGCAAAATGAGAGTGCTACAGGAA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GGAAACCATCAGCTTCAGAACGTTTACCTGATGAGAAAGTCGAACTTTTTAGCAAAATGAGAGTGCTACAGGAA 1215
Query 1333 AAGAAACAAAAAATGGACAAATTGCTTGGAGAACTTCATACACTTCGAGATCAGCATCTTAACAATTCATCATC 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AAGAAACAAAAAATGGACAAATTGCTTGGAGAACTTCATACACTTCGAGATCAGCATCTTAACAATTCATCATC 1289
Query 1407 CTCTCCACAAAGGAGTGTCGATCAGAGAAGTACTTCAGCTCCCTCTGCTTCTGTAGGCTTGGCACCGGTTGTCA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 CTCTCCACAAAGGAGTGTCGATCAGAGAAGTACTTCAGCTCCCTCTGCTTCTGTAGGCTTGGCACCGGTTGTCA 1363
Query 1481 ATGGAGAATCCAATAGCCTCACATCATCTGTTCCTTATCCTACTGCTTCTCTAGTATCTCAGAATGAGAGTGAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 ATGGAGAATCCAATAGCCTCACATCATCTGTTCCTTATCCTACTGCTTCTCTAGTATCTCAGAATGAGAGTGAA 1437
Query 1555 AACGAAGGCCACCTCAATCCATCTGAAAAACTCCAG-------------------------------------- 1590
||||||||||||||||||||||||||||||||||||
Sbjct 1438 AACGAAGGCCACCTCAATCCATCTGAAAAACTCCAGAAGTTAAATGAAGTTCGAAAGAGATTGAATGAGCTAAG 1511
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 1512 AGAATTAGTTCATTATTATGAACAAACGTCAGACATGATGACAGATGCTGTGAATGAAAACAGGAAAGATGAAG 1585
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 1586 AAACTGAAGAGTCAGAATATGATTCTGAGCATGAAAATTCCGAGCCTGTTACTAACATTCGAAATCCACAAGTA 1659
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 1660 GCTTCCACTTGGAATGAAGTAAATAGTCATAGTAATGCACAGTGTGTTTCTAATAATAGAGATGGGCGAACAGT 1733
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 1734 TAATTCTAATTGTGAAATTAACAACAGATCTGCTGCCAACATAAGGGCTCTAAACATGCCTCCTTCTTTAGATT 1807
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 1808 GTCGATATAATAGAGAAGGGGAACAGGAGATTCATGTTGCACAAGGTGAAGATGATGAGGAGGAGGAGGAAGAA 1881
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 1882 GCAGAAGAGGAGGGAGTCAGTGGAGCTTCATTATCTAGTCACAGGAGCAGTCTGGTTGATGAGCATCCAGAAGA 1955
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 1956 TGCTGAATTTGAACAGAAGATCAACCGACTTATGGCTGCAAAACAGAAACTTAGACAGTTACAAGATCTTGTTG 2029
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2030 CTATGGTACAGGATGATGATGCAGCTCAAGGAGTTATCTCTGCCAGTGCATCAAATTTGGATGATTTCTACCCA 2103
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2104 GCAGAAGAAGACACCAAGCAAAATTCAAATAACACTAGAGGAAATGCCAATAAAACACAGAAAGATACTGGAGT 2177
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2178 AAATGAAAAGGCAAGAGAGAAATTTTATGAGGCTAAACTACAGCAGCAACAGAGAGAGCTAAAACAATTGCAGG 2251
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2252 AAGAAAGAAAGAAACTGATTGACATTCAGGAGAAAATTCAAGCATTGCAAACGGCATGCCCTGACTTACAGCTG 2325
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2326 TCAGCTGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCAGCTGTTACTTCAACCCCAACTGTTAATCA 2399
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2400 ACACGAGACCAGTACAAGCAAATCTGTTTTTGAGCCTGAAGATTCTTCAATAGTAGATAATGAGTTGTGGTCAG 2473
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2474 AAATGAGAAGACATGAAATGTTGAGGGAGGAGCTGCGACAGAGAAGAAAGCAGCTTGAAGCTCTGATGGCTGAA 2547
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2548 CATCAGAGGAGGCAAGGTCTAGCTGAAACTGCATCTCCAGTGGCTGTGTCATTGAGAAGTGATGGATCTGAGAA 2621
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2622 CCTATGTACTCCTCAGCAAAGTAGAACAGAAAAAACGATGGCAACTTGGGGAGGGTCTACCCAGTGTGCACTAG 2695
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2696 ATGAAGAAGGAGATGAAGACGGTTACCTTTCTGAAGGAATTGTTCGGACAGATGAAGAGGAGGAAGAAGAGCAA 2769
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2770 GATGCCAGTTCCAATGATAACTTTTCTGTGTGTCCTTCTAACAGTGTGAATCATAACTCCTACAATGGAAAGGA 2843
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2844 AACTAAAAATAGGTGGAAGAACAATTGCCCTTTTTCGGCAGATGAAAATTATCGTCCTTTAGCCAAGACAAGGC 2917
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2918 AACAGAATATCAGCATGCAACGGCAAGAAAACCTTCGTTGGGTGTCAGAGCTCTCTTACGTAGAAGAGAAAGAA 2991
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 2992 CAATGGCAAGAACAAATCAATCAGCTAAAGAAACAGCTTGATTTTAGTGTCAGTATTTGTCAGACTTTGATGCA 3065
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3066 AGACCAGCAGACTCTATCTTGTCTGCTACAAACTCTTCTCACGGGTCCTTACAGTGTTATGCCCAGCAATGTTG 3139
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3140 CATCTCCTCAAGTACACTTCATAATGCACCAGTTGAACCAGTGCTATACTCAGCTAACATGGCAACAGAATAAT 3213
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3214 GTTCAGAGGTTGAAACAAATGCTAAATGAACTTATGCGCCAGCAAAATCAGCATCCAGAAAAACCTGGAGGCAA 3287
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3288 GGAAAGAGGCAGTAGTGCATCGCACCCTCCTTCTCCCAGTTTATTTTGTCCTTTCAGCTTTCCAACACAGCCTG 3361
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3362 TAAATCTCTTCAATATACCTGGATTTACTAACTTTTCATCATTTGCACCAGGTATGAATTTCAGCCCTTTATTT 3435
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3436 CCTTCTAATTTTGGAGATTTTTCTCAGAATATCTCTACACCCAGTGAACAGCAGCAACCCTTAGCCCAGAATTC 3509
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3510 TTCAGGAAAAACAGAATATATGGCTTTTCCAAAACCTTTTGAAAGCAGTTCCTCTATTGGAGCAGAGAAACCAA 3583
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3584 GGAATAAAAAACTGCCTGAAGAGGAGGTGGAAAGCAGTAGGACACCATGGTTATATGAACAAGAAGGTGAAGTA 3657
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3658 GAGAAACCATTTATCAAGACTGGATTTTCAGTGTCTGTAGAAAAATCTACAAGTAGTAACCGCAAAAATCAATT 3731
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3732 AGATACAAACGGAAGAAGACGCCAGTTTGATGAAGAATCACTGGAAAGCTTTAGCAGTATGCCTGATCCAGTAG 3805
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3806 ATCCAACAACAGTGACTAAAACATTCAAGACAAGAAAAGCGTCTGCACAGGCCAGCCTGGCATCTAAAGATAAA 3879
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3880 ACTCCCAAGTCAAAAAGTAAGAAGAGGAATTCTACTCAGCTGAAAAGCAGAGTTAAAAACATCAAAACTGGGAG 3953
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 3954 TGATTTTTCCATGTTTGAAGCTTTGCGAGATACTATTTATTCTGAAGTAGCTACATTAATTTCTCAAAATGAAT 4027
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4028 CTCGTCCACATTTTCTTATTGAACTCTTCCATGAGCTGCAGCTACTAAACACAGACTACTTGAGACAGAGGGCT 4101
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4102 TTATATGCATTGCAGGACATAGTATCCAGACATATTTCTGAGAGCCATGAAAAAGGAGAAAATGTAAAGTCAGT 4175
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4176 AAACTCTGGTACTTGGATAGCATCAAACTCAGAACTTACTCCTAGTGAGAGCCTTGCTACTACTGATGATGAAA 4249
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4250 CTTTTGAGAAGAACTTTGAAAGAGAAACCCATAAAATAAGTGAGCAAAATGATGCTGATAATGCTAGTGTCCTG 4323
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4324 TCTGTATCATCAAATTTTGAGCCTTTTGCAACAGATGATCTAGGTAACACCGTGATTCACTTAGATCAAGCATT 4397
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4398 AGCCAGAATGAGAGAATATGAGCGTATGAAGACTGAGGCTGAAAGTAACTCAAATATGAGATGCACCTGCAGGA 4471
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4472 TTATTGAGGATGGAGATGGTGCTGGTGCAGAAACTCCCGTTATTGAAAATCGTAGTTCACAACAACCTGTAAGT 4545
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4546 GAAGTTTCTACCATCCCATGTCCTAGAATTGATACTCAGCAGCTGGACCGGCAAATTAAAGCAATTATGAAAGA 4619
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4620 AGTCATTCCTTTTTTGAAGGAGCACATGGATGAAGTATGCTCCTCGCAGCTTCTAACTTCAGTAAGGCGCATGG 4693
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4694 TTTTGACCCTTACCCAGCAAAATGATGAGAGCAAAGAGTTTGTAAAGTTCTTTCATAAACAACTTGGAAGTATA 4767
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4768 TTACAGGATTCACTGGCAAAATTTGCTGGCAGAAAACTGAAAGACTGTGGAGAAGATCTTCTTGTAGAGATATC 4841
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4842 TGAAGTGTTGTTCAATGAATTGGCTTTCTTTAAGCTTATGCAAGATTTGGATAATAATAGTATAACTGTTAAAC 4915
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4916 AGAGATGCAAAAGGAAAATAGAAGCAACTGGAGTGATACAATCTTGTGCCAAAGAGGCTAAAAGGATTCTTGAA 4989
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 4990 GATCATGGCTCACCTGCTGGAGAGATTGATGATGAAGACAAAGACAAGGATGAAACTGAAACAGTTAAGCAGAC 5063
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5064 TCAAACATCTGAGGTGTATGATGGTCCCAAAAATGTAAGATCTGATATTTCTGATCAAGAGGAAGATGAAGAAA 5137
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5138 GTGAAGGATGTCCAGTGTCTATTAATTTGTCTAAAGCTGAAACTCAGGCTTTAACTAATTATGGAAGTGGAGAA 5211
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5212 GATGAAAATGAGGATGAAGAAATGGAAGAATTTGAAGAAGGCCCTGTGGATGTCCAGACTTCCCTCCAGGCTAA 5285
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5286 CACTGAAGCTACTGAAGAAAATGAACATGATGAACAGGTCCTACAACGTGACTTTAAAAAGACAGCAGAAAGCA 5359
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5360 AAAATGTCCCATTGGAACGAGAAGCCACTAGTAAAAATGACCAAAATAACTGTCCTGTGAAACCCTGTTACCTC 5433
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5434 AATATCTTGGAAGATGAGCAACCTTTAAATAGTGCTGCCCATAAGGAGTCACCTCCTACTGTTGATTCAACTCA 5507
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5508 ACAGCCTAACCCTTTGCCGTTACGTTTACCTGAAATGGAACCCTTAGTGCCTAGAGTCAAAGAAGTTAAATCTG 5581
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5582 CTCAGGAAACTCCTGAAAGCTCTCTGGCTGGAAGTCCTGATACTGAATCTCCAGTGTTAGTGAATGACTATGAA 5655
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5656 GCAGAATCTGGTAATATAAGTCAAAAGTCTGATGAAGAAGATTTTGTAAAAGTTGAAGATTTACCACTGAAACT 5729
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5730 GACAATATATTCAGAGGCAGATCTAAGAAAGAAAATGGTAGAAGAAGAACAGAAAAACCATTTATCTGGTGAAA 5803
Query 1591 -------------------------------------------------------------------------- 1590
Sbjct 5804 TATGTGAAATGCAGACCGAAGAATTAGCTGGAAATTCTGAGACACTAAAAGAACCTGAAACGGTGGGAGCCCAG 5877
Query 1591 ------ 1590
Sbjct 5878 AGTATA 5883