Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11149
Subject:
NM_001113559.2
Aligned Length:
2152
Identities:
1715
Gaps:
233

Alignment

Query    1  ---------------------------------------ATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  74

Query   36  AGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCT  109
            ..||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||||||||||||
Sbjct   75  GACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGAGGAGAGTGAGAGGCTCCCAGCCT  148

Query  110  TTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACG  183
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TTCACCTTCCCTTACATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACG  222

Query  184  CAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATGGAAGTTGATGGCAATAAAGTTATGTC  257
            ||||||||||||||.|.||||||.||||||...||||||||.|||||||||||.||||||||||||||||||||
Sbjct  223  CAAGAGACTTGTGGTCCTAGGACCCCCACTGTGCAGCACAACACAATGGAAGTCGATGGCAATAAAGTTATGTC  296

Query  258  TTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCT  331
            ||||||.||.|||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.
Sbjct  297  TTCATTAGCTCCATACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGTGGCGAGTCCG  370

Query  332  TGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAG  405
            ||||.||..||||||||||.|||||.||.||||||||||||||.|||||.|||||.||.||||||.||||||||
Sbjct  371  TGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTGGACACCCTGAAGCAG  444

Query  406  AGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCTCAAAGGACTG  479
            |||||.|||||||||||.|||||.||.|||||.|||||.||.||||||||||||||.||||||||.||||||||
Sbjct  445  AGGAAGATGGAAGAGCTGATCAAGAATGAGCCAGAAGACACTCCCAGTATTGAAAAGCTACTCTCCAAGGACTG  518

Query  480  GAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGA  553
            ||||||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||.||||||.|.|||||||
Sbjct  519  GAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATAAAAGGGACTCCTGAGAGCCTCGCTGAGA  592

Query  554  AAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAG  627
            |.||..||||.|||||||||||||||||.|||||||||||.||.||.|||||.||..|||||||||||||||||
Sbjct  593  AGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGCCCACGATGAG  666

Query  628  CAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGCAACAAGAACA  701
            ||||||||..|.|||||.||||||||.|||||||||||||||||.|||||||||||||||||||||||.||.||
Sbjct  667  CAGAAGAAGTTGGCTGCATCTCAGATAGAGAAACAGCGTCAGCAGATGGAGCTGGCCAAGCAGCAACAGGAGCA  740

Query  702  AATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAGATC---CAGG  772
            .||.||.||.||.||||||||||||||.||||||||||||||||||||.|||||.||||||||||||   ||||
Sbjct  741  GATCGCGAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTTCAGCAACAGATCCAGCAGG  814

Query  773  TTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGCAGCTGCCCAG  846
            ||||||||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||.||.||||||||||||
Sbjct  815  TTCAAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCTGACCAGCGGACCCTCGCAGCAGCTGCCCAG  888

Query  847  CAAGGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGCTGATCCC  920
            ||||||||||||||.|||||.||.||||||||.||||||||.||.|||||||||||||||||||||||||||||
Sbjct  889  CAAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCTGTTCAGCTGATCCC  962

Query  921  AACTACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCC  994
            |||.||.||||||||||||||.|||||||||||||||||||||||||||||.||||||.| |.|..||  ||||
Sbjct  963  AACCACTATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGGA-TGAAGTG--GCCC  1033

Query  995  AGCTAGCTG---CAATGCAGGTATCTCCAGGA--------GGGAA-------GC--------------------  1030
            |||.| |||   |.|| |||.||...|||.||        ||.||       ||                    
Sbjct 1034  AGCCA-CTGAACCTAT-CAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACCTCTCCTCACA  1105

Query 1031  TGCCAG------GCATA-----------------CCCCAA------------GGCAACCT----TGGTGCTGCT  1065
            ||||||      |.|||                 ||.|||            ||||.|.|    |.||.||.||
Sbjct 1106  TGCCAGCTCTGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGCTAGTCCTTCT  1179

Query 1066  G--------------------TAT----------------CTCCTACCA--GCATTC-----------------  1084
            |                    |||                ||...||||  |||.||                 
Sbjct 1180  GCAAGAGTTAGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCTCGCCAGAT  1253

Query 1085  ---------ACACAGACAAGAGCA-CA----------------------------AACAG-------CCCACCA  1113
                     ||.|||.|.|||||| ||                            |||||       |.||.||
Sbjct 1254  GAAAGAGCAACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATAGGTCTCAGCA  1327

Query 1114  CC-------CAAAAGCAAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAG  1180
            .|       ||.||  |||||||||||||||||||||||.|||||||||||..|||||||||||||||||||||
Sbjct 1328  ACTGCCGGACAGAA--AAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAACAGAATGAAG  1399

Query 1181  AAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAG  1254
            ||||.|||||||||||||.||||||||||||||||.||||||||||||||||.|||||.|||||||||||||||
Sbjct 1400  AAGGGAAATTTAGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCGCTGGAGTCTCAGAG  1473

Query 1255  TCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCAT  1328
            |||||||||||.|||||||||.|.||.|||||||||||.||.||||||||||||||||||||||||||||||||
Sbjct 1474  TCAAGAATTTACAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCGTCCAATGAATGCCTTCAT  1547

Query 1329  GGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGA  1402
            |||||||||.||||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||||
Sbjct 1548  GGTGTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAAGA  1621

Query 1403  TATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGC  1476
            ||.|||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||.||||||
Sbjct 1622  TACTGGGATCTCGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGCCTCAGC  1695

Query 1477  AAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAA  1550
            ||.||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.|||||
Sbjct 1696  AAACAGCACCTGGAGAAGTACCCGGACTACAAGTACAAGCCTAGGCCAAAGCGCACCTGTCTGGTGGACGGCAA  1769

Query 1551  AAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTG  1624
            .||.|||||.||.||.||.||||||||.||||||||.|||.||.|||||||||||||.|||||||||||.||||
Sbjct 1770  GAAACTGCGTATCGGGGAGTACAAGGCCATCATGCGGAACCGGAGGCAGGAAATGCGACAGTACTTCAACGTTG  1843

Query 1625  GGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCC  1698
            ||||||||||||||||||||||.||.||.||.||.|||||.|||||..|.||||||||||||||.||.|||||.
Sbjct 1844  GGCAACAAGCACAGATCCCCATCGCGACGGCCGGAGTTGTATACCCCAGCGCCATCGCCATGGCAGGAATGCCG  1917

Query 1699  TCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCAC  1772
            |||||||||||||||||.||||||||.||||||||.||||||||.|||||.||||||||.||.|||||||||||
Sbjct 1918  TCCCCTCACCTGCCCTCCGAGCACTCGAGCGTGTCCAGCAGCCCGGAGCCCGGGATGCCCGTGATCCAGAGCAC  1991

Query 1773  TTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATG  1846
            ||||||.|..||.|||||||||||.||.|||||.||||||||.|||||.|||||||||||.|||||.|||||.|
Sbjct 1992  TTACGGCGCCAAGGGAGAGGAGCCCCACATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGAGAGATTTACG  2065

Query 1847  ATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAA  1920
            |.||||||||.|||||.|||||.||.||.|||||.|||||||||||||||||.||||||||.|||||.||||||
Sbjct 2066  AGGAGTACGATGAGGAGGAGGAGGACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACATTGCGGGACAA  2139

Query 1921  GCCAAC  1926
            ||||||
Sbjct 2140  GCCAAC  2145

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