Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11149
Subject:
NM_001243163.1
Aligned Length:
2149
Identities:
1617
Gaps:
335

Alignment

Query    1  ---------------------------------------ATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  74

Query   36  AGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCT  109
            ..||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||||||||||||
Sbjct   75  GACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGAGGAGAGTGAGAGGCTCCCAGCCT  148

Query  110  TTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACG  183
            |||||||||||||.|||                                                         
Sbjct  149  TTCACCTTCCCTTACAT---------------------------------------------------------  165

Query  184  CAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATGGAAGTTGATGGCAATAAAGTTATGTC  257
                                                            |||||.||||||||||||||||||||
Sbjct  166  ------------------------------------------------GAAGTCGATGGCAATAAAGTTATGTC  191

Query  258  TTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCT  331
            ||||||.||.|||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.
Sbjct  192  TTCATTAGCTCCATACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGTGGCGAGTCCG  265

Query  332  TGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAG  405
            ||||.||..||||||||||.|||||.||.||||||||||||||.|||||.|||||.||.||||||.||||||||
Sbjct  266  TGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTGGACACCCTGAAGCAG  339

Query  406  AGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCTCAAAGGACTG  479
            |||||.|||||||||||.|||||.||.|||||.|||||.||.||||||||||||||.||||||||.||||||||
Sbjct  340  AGGAAGATGGAAGAGCTGATCAAGAATGAGCCAGAAGACACTCCCAGTATTGAAAAGCTACTCTCCAAGGACTG  413

Query  480  GAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGA  553
            ||||||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||.||||||.|.|||||||
Sbjct  414  GAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATAAAAGGGACTCCTGAGAGCCTCGCTGAGA  487

Query  554  AAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAG  627
            |.||..||||.|||||||||||||||||.|||||||||||.||.||.|||||.||..|||||||||||||||||
Sbjct  488  AGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGCCCACGATGAG  561

Query  628  CAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGCAACAAGAACA  701
            ||||||||..|.|||||.||||||||.|||||||||||||||||.|||||||||||||||||||||||.||.||
Sbjct  562  CAGAAGAAGTTGGCTGCATCTCAGATAGAGAAACAGCGTCAGCAGATGGAGCTGGCCAAGCAGCAACAGGAGCA  635

Query  702  AATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAGATCCAGGTTC  775
            .||.||.||.||.||||||||||||||.||||||||||||||||||||.|||||.|||||||||||||||||||
Sbjct  636  GATCGCGAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTTCAGCAACAGATCCAGGTTC  709

Query  776  AAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGCAGCTGCCCAGCAA  849
            |||||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||.||.|||||||||||||||
Sbjct  710  AAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCTGACCAGCGGACCCTCGCAGCAGCTGCCCAGCAA  783

Query  850  GGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGCTGATCCCAAC  923
            |||||||||||.|||||.||.||||||||.||||||||.||.||||||||||||||||||||||||||||||||
Sbjct  784  GGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCTGTTCAGCTGATCCCAAC  857

Query  924  TACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCCAGC  997
            .||.||||||||||||||.|||||||||||||||||||||||||||||.||||||.| |.|..||  |||||||
Sbjct  858  CACTATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGGA-TGAAGTG--GCCCAGC  928

Query  998  TAGCTG---CAATGCAGGTATCTCCAGGA--------GGGAA-------GC--------------------TGC  1033
            .| |||   |.|| |||.||...|||.||        ||.||       ||                    |||
Sbjct  929  CA-CTGAACCTAT-CAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACCTCTCCTCACATGC  1000

Query 1034  CAG------GCATA-----------------CCCCAA------------GGCAACCT----TGGTGCTGCTG--  1066
            |||      |.|||                 ||.|||            ||||.|.|    |.||.||.|||  
Sbjct 1001  CAGCTCTGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGCTAGTCCTTCTGCA  1074

Query 1067  ------------------TAT----------------CTCCTACCA--GCATTC--------------------  1084
                              |||                ||...||||  |||.||                    
Sbjct 1075  AGAGTTAGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCTCGCCAGATGAA  1148

Query 1085  ------ACACAGACAAGAGCA-CA----------------------------AACAG-------CCCACCACC-  1115
                  ||.|||.|.|||||| ||                            |||||       |.||.||.| 
Sbjct 1149  AGAGCAACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATAGGTCTCAGCAACT  1222

Query 1116  ------CAAAAGCAAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAG  1183
                  ||.||  |||||||||||||||||||||||.|||||||||||..||||||||||||||||||||||||
Sbjct 1223  GCCGGACAGAA--AAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAACAGAATGAAGAAG  1294

Query 1184  GAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCA  1257
            |.|||||||||||||.||||||||||||||||.||||||||||||||||.|||||.||||||||||||||||||
Sbjct 1295  GGAAATTTAGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCGCTGGAGTCTCAGAGTCA  1368

Query 1258  AGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGT  1331
            ||||||||.|||||||||.|.||.|||||||||||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1369  AGAATTTACAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCGTCCAATGAATGCCTTCATGGT  1442

Query 1332  GTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATAT  1405
            ||||||.||||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||||||.
Sbjct 1443  GTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAAGATAC  1516

Query 1406  TGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAG  1479
            |||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||.||||||||.
Sbjct 1517  TGGGATCTCGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGCCTCAGCAAA  1590

Query 1480  CAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAA  1553
            ||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.|||||.||
Sbjct 1591  CAGCACCTGGAGAAGTACCCGGACTACAAGTACAAGCCTAGGCCAAAGCGCACCTGTCTGGTGGACGGCAAGAA  1664

Query 1554  GCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGC  1627
            .|||||.||.||.||.||||||||.||||||||.|||.||.|||||||||||||.|||||||||||.|||||||
Sbjct 1665  ACTGCGTATCGGGGAGTACAAGGCCATCATGCGGAACCGGAGGCAGGAAATGCGACAGTACTTCAACGTTGGGC  1738

Query 1628  AACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCC  1701
            |||||||||||||||||||.||.||.||.||.|||||.|||||..|.||||||||||||||.||.|||||.|||
Sbjct 1739  AACAAGCACAGATCCCCATCGCGACGGCCGGAGTTGTATACCCCAGCGCCATCGCCATGGCAGGAATGCCGTCC  1812

Query 1702  CCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTA  1775
            ||||||||||||||.||||||||.||||||||.||||||||.|||||.||||||||.||.||||||||||||||
Sbjct 1813  CCTCACCTGCCCTCCGAGCACTCGAGCGTGTCCAGCAGCCCGGAGCCCGGGATGCCCGTGATCCAGAGCACTTA  1886

Query 1776  CGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATGATG  1849
            |||.|..||.|||||||||||.||.|||||.||||||||.|||||.|||||||||||.|||||.|||||.||.|
Sbjct 1887  CGGCGCCAAGGGAGAGGAGCCCCACATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGAGAGATTTACGAGG  1960

Query 1850  AGTACGACGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCC  1923
            |||||||.|||||.|||||.||.||.|||||.|||||||||||||||||.||||||||.|||||.|||||||||
Sbjct 1961  AGTACGATGAGGAGGAGGAGGACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACATTGCGGGACAAGCC  2034

Query 1924  AAC  1926
            |||
Sbjct 2035  AAC  2037

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