Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11149
Subject:
XM_006506938.3
Aligned Length:
2236
Identities:
1715
Gaps:
317

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAGATACCTGCTCTCCTCCACGCCTGGTTTCTGGAGTTTGAAGCTACAGAAACTTTGCCTGGGTTGCCAGG  74

Query    1  -------------------------------------------------ATGTCTTCCAAGCGACCAGCCTCTC  25
                                                             |||||||||||||||||||||||||
Sbjct   75  ACATTCAGAGCACTTTGTGGAAAGCAAGCTAGCACTGAGCCGGACAGAGATGTCTTCCAAGCGACCAGCCTCTC  148

Query   26  CGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGG  99
            ||||||||||..||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||
Sbjct  149  CGTATGGGGAGACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGAGGAGAGTGAGAGG  222

Query  100  CTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTC  173
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTCCCAGCCTTTCACCTTCCCTTACATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTC  296

Query  174  TCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATGGAAGTTGATGGCAATA  247
            ||||||||||||||||||||||||.|.||||||.||||||...||||||||.|||||||||||.||||||||||
Sbjct  297  TCTGCTGACGCAAGAGACTTGTGGTCCTAGGACCCCCACTGTGCAGCACAACACAATGGAAGTCGATGGCAATA  370

Query  248  AAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGT  321
            ||||||||||||||||.||.|||.||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  371  AAGTTATGTCTTCATTAGCTCCATACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGT  444

Query  322  GGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACAC  395
            |||||||||.||||.||..||||||||||.|||||.||.||||||||||||||.|||||.|||||.||.|||||
Sbjct  445  GGCGAGTCCGTGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTGGACAC  518

Query  396  CTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCT  469
            |.|||||||||||||.|||||||||||.|||||.||.|||||.|||||.||.||||||||||||||.|||||||
Sbjct  519  CCTGAAGCAGAGGAAGATGGAAGAGCTGATCAAGAATGAGCCAGAAGACACTCCCAGTATTGAAAAGCTACTCT  592

Query  470  CAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGC  543
            |.||||||||||||||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||.||||||
Sbjct  593  CCAAGGACTGGAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATAAAAGGGACTCCTGAGAGC  666

Query  544  TTAGCTGAGAAAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGC  617
            .|.||||||||.||..||||.|||||||||||||||||.|||||||||||.||.||.|||||.||..|||||||
Sbjct  667  CTCGCTGAGAAGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGC  740

Query  618  CCACGATGAGCAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGC  691
            ||||||||||||||||||..|.|||||.||||||||.|||||||||||||||||.|||||||||||||||||||
Sbjct  741  CCACGATGAGCAGAAGAAGTTGGCTGCATCTCAGATAGAGAAACAGCGTCAGCAGATGGAGCTGGCCAAGCAGC  814

Query  692  AACAAGAACAAATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAG  765
            ||||.||.||.||.||.||.||.||||||||||||||.||||||||||||||||||||.|||||.|||||||||
Sbjct  815  AACAGGAGCAGATCGCGAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTTCAGCAACAG  888

Query  766  ATC---CAGGTTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGC  836
            |||   ||||||||||||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||.||.||
Sbjct  889  ATCCAGCAGGTTCAAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCTGACCAGCGGACCCTCGCAGC  962

Query  837  AGCTGCCCAGCAAGGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTC  910
            ||||||||||||||||||||||||.|||||.||.||||||||.||||||||.||.|||||||||||||||||||
Sbjct  963  AGCTGCCCAGCAAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCTGTTC  1036

Query  911  AGCTGATCCCAACTACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTA  984
            |||||||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||.||||||.| |.|
Sbjct 1037  AGCTGATCCCAACCACTATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGGA-TGA  1109

Query  985  TATGCTGCCCAGCTAGCTG---CAATGCAGGTATCTCCAGGA--------GGGAA-------GC----------  1030
            ..||  |||||||.| |||   |.|| |||.||...|||.||        ||.||       ||          
Sbjct 1110  AGTG--GCCCAGCCA-CTGAACCTAT-CAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACC  1179

Query 1031  ----------TGCCAG------GCATA-----------------CCCCAA------------GGCAACCT----  1055
                      ||||||      |.|||                 ||.|||            ||||.|.|    
Sbjct 1180  TCTCCTCACATGCCAGCTCTGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGC  1253

Query 1056  TGGTGCTGCTG--------------------TAT----------------CTCCTACCA--GCATTC-------  1084
            |.||.||.|||                    |||                ||...||||  |||.||       
Sbjct 1254  TAGTCCTTCTGCAAGAGTTAGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAG  1327

Query 1085  -------------------ACACAGACAAGAGCA-CA----------------------------AACAG----  1106
                               ||.|||.|.|||||| ||                            |||||    
Sbjct 1328  CTCGCCAGATGAAAGAGCAACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATA  1401

Query 1107  ---CCCACCACC-------CAAAAGCAAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAA  1170
               |.||.||.|       ||.||  |||||||||||||||||||||||.|||||||||||..|||||||||||
Sbjct 1402  GGTCTCAGCAACTGCCGGACAGAA--AAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAA  1473

Query 1171  CAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGG  1244
            ||||||||||||||.|||||||||||||.||||||||||||||||.||||||||||||||||.|||||.|||||
Sbjct 1474  CAGAATGAAGAAGGGAAATTTAGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCGCTGG  1547

Query 1245  AGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGA  1318
            |||||||||||||||||||||.|||||||||.|.||.|||||||||||.||.||||||||||||||||||||||
Sbjct 1548  AGTCTCAGAGTCAAGAATTTACAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCGTCCAATGA  1621

Query 1319  ATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAAC  1392
            |||||||||||||||||||.||||||||||||||.||.||||||||.||||||||.|||||||||||.||||||
Sbjct 1622  ATGCCTTCATGGTGTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAAC  1695

Query 1393  ATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGC  1466
            ||||||||||||.|||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||
Sbjct 1696  ATCAGCAAGATACTGGGATCTCGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGC  1769

Query 1467  CCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGG  1540
            |||.||||||||.||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||
Sbjct 1770  CCGCCTCAGCAAACAGCACCTGGAGAAGTACCCGGACTACAAGTACAAGCCTAGGCCAAAGCGCACCTGTCTGG  1843

Query 1541  TGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTAC  1614
            ||||.|||||.||.|||||.||.||.||.||||||||.||||||||.|||.||.|||||||||||||.||||||
Sbjct 1844  TGGACGGCAAGAAACTGCGTATCGGGGAGTACAAGGCCATCATGCGGAACCGGAGGCAGGAAATGCGACAGTAC  1917

Query 1615  TTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGC  1688
            |||||.||||||||||||||||||||||||||.||.||.||.||.|||||.|||||..|.||||||||||||||
Sbjct 1918  TTCAACGTTGGGCAACAAGCACAGATCCCCATCGCGACGGCCGGAGTTGTATACCCCAGCGCCATCGCCATGGC  1991

Query 1689  TGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTA  1762
            .||.|||||.|||||||||||||||||.||||||||.||||||||.||||||||.|||||.||||||||.||.|
Sbjct 1992  AGGAATGCCGTCCCCTCACCTGCCCTCCGAGCACTCGAGCGTGTCCAGCAGCCCGGAGCCCGGGATGCCCGTGA  2065

Query 1763  TCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGA  1836
            ||||||||||||||||.|..||.|||||||||||.||.|||||.||||||||.|||||.|||||||||||.|||
Sbjct 2066  TCCAGAGCACTTACGGCGCCAAGGGAGAGGAGCCCCACATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGA  2139

Query 1837  GAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATAT  1910
            ||.|||||.||.||||||||.|||||.|||||.||.||.|||||.|||||||||||||||||.||||||||.||
Sbjct 2140  GAGATTTACGAGGAGTACGATGAGGAGGAGGAGGACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACAT  2213

Query 1911  TGCAGGACAAGCCAAC  1926
            |||.||||||||||||
Sbjct 2214  TGCGGGACAAGCCAAC  2229

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.