Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11149
Subject:
XM_006506942.3
Aligned Length:
2233
Identities:
1617
Gaps:
419

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAGATACCTGCTCTCCTCCACGCCTGGTTTCTGGAGTTTGAAGCTACAGAAACTTTGCCTGGGTTGCCAGG  74

Query    1  -------------------------------------------------ATGTCTTCCAAGCGACCAGCCTCTC  25
                                                             |||||||||||||||||||||||||
Sbjct   75  ACATTCAGAGCACTTTGTGGAAAGCAAGCTAGCACTGAGCCGGACAGAGATGTCTTCCAAGCGACCAGCCTCTC  148

Query   26  CGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGG  99
            ||||||||||..||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||
Sbjct  149  CGTATGGGGAGACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGAGGAGAGTGAGAGG  222

Query  100  CTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTC  173
            |||||||||||||||||||||||.|||                                               
Sbjct  223  CTCCCAGCCTTTCACCTTCCCTTACAT-----------------------------------------------  249

Query  174  TCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATGGAAGTTGATGGCAATA  247
                                                                      |||||.||||||||||
Sbjct  250  ----------------------------------------------------------GAAGTCGATGGCAATA  265

Query  248  AAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGT  321
            ||||||||||||||||.||.|||.||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  266  AAGTTATGTCTTCATTAGCTCCATACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGT  339

Query  322  GGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACAC  395
            |||||||||.||||.||..||||||||||.|||||.||.||||||||||||||.|||||.|||||.||.|||||
Sbjct  340  GGCGAGTCCGTGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTGGACAC  413

Query  396  CTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCT  469
            |.|||||||||||||.|||||||||||.|||||.||.|||||.|||||.||.||||||||||||||.|||||||
Sbjct  414  CCTGAAGCAGAGGAAGATGGAAGAGCTGATCAAGAATGAGCCAGAAGACACTCCCAGTATTGAAAAGCTACTCT  487

Query  470  CAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGC  543
            |.||||||||||||||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||.||||||
Sbjct  488  CCAAGGACTGGAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATAAAAGGGACTCCTGAGAGC  561

Query  544  TTAGCTGAGAAAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGC  617
            .|.||||||||.||..||||.|||||||||||||||||.|||||||||||.||.||.|||||.||..|||||||
Sbjct  562  CTCGCTGAGAAGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGC  635

Query  618  CCACGATGAGCAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGC  691
            ||||||||||||||||||..|.|||||.||||||||.|||||||||||||||||.|||||||||||||||||||
Sbjct  636  CCACGATGAGCAGAAGAAGTTGGCTGCATCTCAGATAGAGAAACAGCGTCAGCAGATGGAGCTGGCCAAGCAGC  709

Query  692  AACAAGAACAAATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAG  765
            ||||.||.||.||.||.||.||.||||||||||||||.||||||||||||||||||||.|||||.|||||||||
Sbjct  710  AACAGGAGCAGATCGCGAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTTCAGCAACAG  783

Query  766  ATCCAGGTTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGCAGC  839
            |||||||||||||||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||.||.|||||
Sbjct  784  ATCCAGGTTCAAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCTGACCAGCGGACCCTCGCAGCAGC  857

Query  840  TGCCCAGCAAGGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGC  913
            |||||||||||||||||||||.|||||.||.||||||||.||||||||.||.||||||||||||||||||||||
Sbjct  858  TGCCCAGCAAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCTGTTCAGC  931

Query  914  TGATCCCAACTACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATAT  987
            ||||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||.||||||.| |.|..|
Sbjct  932  TGATCCCAACCACTATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGGA-TGAAGT  1004

Query  988  GCTGCCCAGCTAGCTG---CAATGCAGGTATCTCCAGGA--------GGGAA-------GC-------------  1030
            |  |||||||.| |||   |.|| |||.||...|||.||        ||.||       ||             
Sbjct 1005  G--GCCCAGCCA-CTGAACCTAT-CAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACCTCT  1074

Query 1031  -------TGCCAG------GCATA-----------------CCCCAA------------GGCAACCT----TGG  1058
                   ||||||      |.|||                 ||.|||            ||||.|.|    |.|
Sbjct 1075  CCTCACATGCCAGCTCTGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGCTAG  1148

Query 1059  TGCTGCTG--------------------TAT----------------CTCCTACCA--GCATTC----------  1084
            |.||.|||                    |||                ||...||||  |||.||          
Sbjct 1149  TCCTTCTGCAAGAGTTAGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCTC  1222

Query 1085  ----------------ACACAGACAAGAGCA-CA----------------------------AACAG-------  1106
                            ||.|||.|.|||||| ||                            |||||       
Sbjct 1223  GCCAGATGAAAGAGCAACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATAGGT  1296

Query 1107  CCCACCACC-------CAAAAGCAAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAACAG  1173
            |.||.||.|       ||.||  |||||||||||||||||||||||.|||||||||||..||||||||||||||
Sbjct 1297  CTCAGCAACTGCCGGACAGAA--AAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAACAG  1368

Query 1174  AATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGGAGT  1247
            |||||||||||.|||||||||||||.||||||||||||||||.||||||||||||||||.|||||.||||||||
Sbjct 1369  AATGAAGAAGGGAAATTTAGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCGCTGGAGT  1442

Query 1248  CTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATG  1321
            ||||||||||||||||||.|||||||||.|.||.|||||||||||.||.|||||||||||||||||||||||||
Sbjct 1443  CTCAGAGTCAAGAATTTACAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCGTCCAATGAATG  1516

Query 1322  CCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATC  1395
            ||||||||||||||||.||||||||||||||.||.||||||||.||||||||.|||||||||||.|||||||||
Sbjct 1517  CCTTCATGGTGTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATC  1590

Query 1396  AGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCG  1469
            |||||||||.|||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||
Sbjct 1591  AGCAAGATACTGGGATCTCGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCG  1664

Query 1470  TCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGG  1543
            .||||||||.||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.|||||||
Sbjct 1665  CCTCAGCAAACAGCACCTGGAGAAGTACCCGGACTACAAGTACAAGCCTAGGCCAAAGCGCACCTGTCTGGTGG  1738

Query 1544  ATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTACTTC  1617
            |.|||||.||.|||||.||.||.||.||||||||.||||||||.|||.||.|||||||||||||.|||||||||
Sbjct 1739  ACGGCAAGAAACTGCGTATCGGGGAGTACAAGGCCATCATGCGGAACCGGAGGCAGGAAATGCGACAGTACTTC  1812

Query 1618  AATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGCTGG  1691
            ||.||||||||||||||||||||||||||.||.||.||.||.|||||.|||||..|.||||||||||||||.||
Sbjct 1813  AACGTTGGGCAACAAGCACAGATCCCCATCGCGACGGCCGGAGTTGTATACCCCAGCGCCATCGCCATGGCAGG  1886

Query 1692  GATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTATCC  1765
            .|||||.|||||||||||||||||.||||||||.||||||||.||||||||.|||||.||||||||.||.||||
Sbjct 1887  AATGCCGTCCCCTCACCTGCCCTCCGAGCACTCGAGCGTGTCCAGCAGCCCGGAGCCCGGGATGCCCGTGATCC  1960

Query 1766  AGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGAGAA  1839
            |||||||||||||.|..||.|||||||||||.||.|||||.||||||||.|||||.|||||||||||.|||||.
Sbjct 1961  AGAGCACTTACGGCGCCAAGGGAGAGGAGCCCCACATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGAGAG  2034

Query 1840  ATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGC  1913
            |||||.||.||||||||.|||||.|||||.||.||.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 2035  ATTTACGAGGAGTACGATGAGGAGGAGGAGGACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACATTGC  2108

Query 1914  AGGACAAGCCAAC  1926
            .||||||||||||
Sbjct 2109  GGGACAAGCCAAC  2121

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.