Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11149
Subject:
XM_011241580.2
Aligned Length:
2289
Identities:
1645
Gaps:
468

Alignment

Query    1  ---------------------------------------ATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  74

Query   36  AGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCT  109
            ..||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||||||||||||
Sbjct   75  GACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGAGGAGAGTGAGAGGCTCCCAGCCT  148

Query  110  TTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACG  183
            |||||||||||||.|||                                                         
Sbjct  149  TTCACCTTCCCTTACAT---------------------------------------------------------  165

Query  184  CAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATGGAAGTTGATGGCAATAAAGTTATGTC  257
                                                            |||||.||||||||||||||||||||
Sbjct  166  ------------------------------------------------GAAGTCGATGGCAATAAAGTTATGTC  191

Query  258  TTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCT  331
            ||||||.||.|||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.
Sbjct  192  TTCATTAGCTCCATACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGTGGCGAGTCCG  265

Query  332  TGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAG  405
            ||||.||..||||||||||.|||||.||.||||||||||||||.|||||.|||||.||.||||||.||||||||
Sbjct  266  TGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTGGACACCCTGAAGCAG  339

Query  406  AGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCTCAAAGGACTG  479
            |||||.|||||||||||.|||||.||.|||||.|||||.||.||||||||||||||.||||||||.||||||||
Sbjct  340  AGGAAGATGGAAGAGCTGATCAAGAATGAGCCAGAAGACACTCCCAGTATTGAAAAGCTACTCTCCAAGGACTG  413

Query  480  GAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGA  553
            ||||||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||.||||||.|.|||||||
Sbjct  414  GAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATAAAAGGGACTCCTGAGAGCCTCGCTGAGA  487

Query  554  AAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAG  627
            |.||..||||.|||||||||||||||||.|||||||||||.||.||.|||||.||..|||||||||||||||||
Sbjct  488  AGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGCCCACGATGAG  561

Query  628  CAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGCAACAAGAACA  701
            ||||||||..|.|||||.||||||||.|||||||||||||||||.|||||||||||||||||||||||.||.||
Sbjct  562  CAGAAGAAGTTGGCTGCATCTCAGATAGAGAAACAGCGTCAGCAGATGGAGCTGGCCAAGCAGCAACAGGAGCA  635

Query  702  AATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAGATCCAGGTTC  775
            .||.||.||.||.||||||||||||||.||||||||||||||||||||.|||||.|||||||||||||||||||
Sbjct  636  GATCGCGAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTTCAGCAACAGATCCAGGTTC  709

Query  776  AAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGCAGCTGCCCAGCAA  849
            |||||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||.||.|||||||||||||||
Sbjct  710  AAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCTGACCAGCGGACCCTCGCAGCAGCTGCCCAGCAA  783

Query  850  GGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGCTGATCCCAAC  923
            |||||||||||.|||||.||.||||||||.||||||||.||.||||||||||||||||||||||||||||||||
Sbjct  784  GGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCTGTTCAGCTGATCCCAAC  857

Query  924  TACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCCAGC  997
            .||.||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||.|||||||||||||
Sbjct  858  CACTATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGCAGTTCTATGCTGCCCAGC  931

Query  998  TAGCTGCAATGCAGGTATCTCCAGGAGGGAAGCTGCCAGGCATACCCCAAGGCAACCTTGGTGCTGCTGTATCT  1071
            ||||.|||||||||||.|||||||||||||||||.|.||||.|||||||||||||||||||||||||.||.|||
Sbjct  932  TAGCCGCAATGCAGGTTTCTCCAGGAGGGAAGCTCCTAGGCCTACCCCAAGGCAACCTTGGTGCTGCCGTGTCT  1005

Query 1072  CCTACCAGCATTCACACAGACAAGAGCACAAACAGCCCACCACCCAAAAGC-----------------------  1122
            |||||||||||||||||||||||||||||||||||.|||||||||||||||                       
Sbjct 1006  CCTACCAGCATTCACACAGACAAGAGCACAAACAGTCCACCACCCAAAAGCAAGGATGAAGTGGCCCAGCCACT  1079

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1080  GAACCTATCAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACCTCTCCTCACATGCCAGCTC  1153

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1154  TGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGCTAGTCCTTCTGCAAGAGTT  1227

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1228  AGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCTCGCCAGATGAAAGAGCA  1301

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1302  ACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATAGGTCTCAGCAACTGCCGGA  1375

Query 1123  -----AAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTT  1191
                 |||||||||||||||||||||||.|||||||||||..|||||||||||||||||||||||||.||||||
Sbjct 1376  CAGAAAAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAACAGAATGAAGAAGGGAAATTT  1449

Query 1192  AGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTA  1265
            |||||||.||||||||||||||||.||||||||||||||||.|||||.||||||||||||||||||||||||||
Sbjct 1450  AGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCGCTGGAGTCTCAGAGTCAAGAATTTA  1523

Query 1266  TAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTA  1339
            .|||||||||.|.||.|||||||||||.||.|||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1524  CAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCGA  1597

Query 1340  AAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCT  1413
            |||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||||||.||||||||
Sbjct 1598  AAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAAGATACTGGGATCT  1671

Query 1414  CGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCT  1487
            |||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||.||||||||.||||||||
Sbjct 1672  CGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGCCTCAGCAAACAGCACCT  1745

Query 1488  GGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCA  1561
            ||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.|||||.||.|||||.|
Sbjct 1746  GGAGAAGTACCCGGACTACAAGTACAAGCCTAGGCCAAAGCGCACCTGTCTGGTGGACGGCAAGAAACTGCGTA  1819

Query 1562  TTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCA  1635
            |.||.||.||||||||.||||||||.|||.||.|||||||||||||.|||||||||||.|||||||||||||||
Sbjct 1820  TCGGGGAGTACAAGGCCATCATGCGGAACCGGAGGCAGGAAATGCGACAGTACTTCAACGTTGGGCAACAAGCA  1893

Query 1636  CAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCT  1709
            |||||||||||.||.||.||.||.|||||.|||||..|.||||||||||||||.||.|||||.|||||||||||
Sbjct 1894  CAGATCCCCATCGCGACGGCCGGAGTTGTATACCCCAGCGCCATCGCCATGGCAGGAATGCCGTCCCCTCACCT  1967

Query 1710  GCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGA  1783
            ||||||.||||||||.||||||||.||||||||.|||||.||||||||.||.|||||||||||||||||.|..|
Sbjct 1968  GCCCTCCGAGCACTCGAGCGTGTCCAGCAGCCCGGAGCCCGGGATGCCCGTGATCCAGAGCACTTACGGCGCCA  2041

Query 1784  AAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGAC  1857
            |.|||||||||||.||.|||||.||||||||.|||||.|||||||||||.|||||.|||||.||.||||||||.
Sbjct 2042  AGGGAGAGGAGCCCCACATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGAGAGATTTACGAGGAGTACGAT  2115

Query 1858  GAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAAC  1926
            |||||.|||||.||.||.|||||.|||||||||||||||||.||||||||.|||||.||||||||||||
Sbjct 2116  GAGGAGGAGGAGGACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACATTGCGGGACAAGCCAAC  2184

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