Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11149
Subject:
XM_017321475.1
Aligned Length:
2152
Identities:
1617
Gaps:
338

Alignment

Query    1  ---------------------------------------ATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGA  74

Query   36  AGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCT  109
            ..||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||||||||||||
Sbjct   75  GACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGAGGAGAGTGAGAGGCTCCCAGCCT  148

Query  110  TTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACG  183
            |||||||||||||.|||                                                         
Sbjct  149  TTCACCTTCCCTTACAT---------------------------------------------------------  165

Query  184  CAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATGGAAGTTGATGGCAATAAAGTTATGTC  257
                                                            |||||.||||||||||||||||||||
Sbjct  166  ------------------------------------------------GAAGTCGATGGCAATAAAGTTATGTC  191

Query  258  TTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCT  331
            ||||||.||.|||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.
Sbjct  192  TTCATTAGCTCCATACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGTGGCGAGTCCG  265

Query  332  TGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAG  405
            ||||.||..||||||||||.|||||.||.||||||||||||||.|||||.|||||.||.||||||.||||||||
Sbjct  266  TGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTGGACACCCTGAAGCAG  339

Query  406  AGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCTCAAAGGACTG  479
            |||||.|||||||||||.|||||.||.|||||.|||||.||.||||||||||||||.||||||||.||||||||
Sbjct  340  AGGAAGATGGAAGAGCTGATCAAGAATGAGCCAGAAGACACTCCCAGTATTGAAAAGCTACTCTCCAAGGACTG  413

Query  480  GAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGA  553
            ||||||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||.||||||.|.|||||||
Sbjct  414  GAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATAAAAGGGACTCCTGAGAGCCTCGCTGAGA  487

Query  554  AAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAG  627
            |.||..||||.|||||||||||||||||.|||||||||||.||.||.|||||.||..|||||||||||||||||
Sbjct  488  AGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGCCCACGATGAG  561

Query  628  CAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGCAACAAGAACA  701
            ||||||||..|.|||||.||||||||.|||||||||||||||||.|||||||||||||||||||||||.||.||
Sbjct  562  CAGAAGAAGTTGGCTGCATCTCAGATAGAGAAACAGCGTCAGCAGATGGAGCTGGCCAAGCAGCAACAGGAGCA  635

Query  702  AATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAGATC---CAGG  772
            .||.||.||.||.||||||||||||||.||||||||||||||||||||.|||||.||||||||||||   ||||
Sbjct  636  GATCGCGAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTTCAGCAACAGATCCAGCAGG  709

Query  773  TTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGCAGCTGCCCAG  846
            ||||||||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||.||.||||||||||||
Sbjct  710  TTCAAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCTGACCAGCGGACCCTCGCAGCAGCTGCCCAG  783

Query  847  CAAGGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGCTGATCCC  920
            ||||||||||||||.|||||.||.||||||||.||||||||.||.|||||||||||||||||||||||||||||
Sbjct  784  CAAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCTGTTCAGCTGATCCC  857

Query  921  AACTACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCC  994
            |||.||.||||||||||||||.|||||||||||||||||||||||||||||.||||||.| |.|..||  ||||
Sbjct  858  AACCACTATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGGA-TGAAGTG--GCCC  928

Query  995  AGCTAGCTG---CAATGCAGGTATCTCCAGGA--------GGGAA-------GC--------------------  1030
            |||.| |||   |.|| |||.||...|||.||        ||.||       ||                    
Sbjct  929  AGCCA-CTGAACCTAT-CAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACCTCTCCTCACA  1000

Query 1031  TGCCAG------GCATA-----------------CCCCAA------------GGCAACCT----TGGTGCTGCT  1065
            ||||||      |.|||                 ||.|||            ||||.|.|    |.||.||.||
Sbjct 1001  TGCCAGCTCTGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGCTAGTCCTTCT  1074

Query 1066  G--------------------TAT----------------CTCCTACCA--GCATTC-----------------  1084
            |                    |||                ||...||||  |||.||                 
Sbjct 1075  GCAAGAGTTAGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCTCGCCAGAT  1148

Query 1085  ---------ACACAGACAAGAGCA-CA----------------------------AACAG-------CCCACCA  1113
                     ||.|||.|.|||||| ||                            |||||       |.||.||
Sbjct 1149  GAAAGAGCAACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATAGGTCTCAGCA  1222

Query 1114  CC-------CAAAAGCAAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAG  1180
            .|       ||.||  |||||||||||||||||||||||.|||||||||||..|||||||||||||||||||||
Sbjct 1223  ACTGCCGGACAGAA--AAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAACAGAATGAAG  1294

Query 1181  AAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAG  1254
            ||||.|||||||||||||.||||||||||||||||.||||||||||||||||.|||||.|||||||||||||||
Sbjct 1295  AAGGGAAATTTAGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCGCTGGAGTCTCAGAG  1368

Query 1255  TCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCAT  1328
            |||||||||||.|||||||||.|.||.|||||||||||.||.||||||||||||||||||||||||||||||||
Sbjct 1369  TCAAGAATTTACAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCGTCCAATGAATGCCTTCAT  1442

Query 1329  GGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGA  1402
            |||||||||.||||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||||
Sbjct 1443  GGTGTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAAGA  1516

Query 1403  TATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGC  1476
            ||.|||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||.||||||
Sbjct 1517  TACTGGGATCTCGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGCCTCAGC  1590

Query 1477  AAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAA  1550
            ||.||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.|||||
Sbjct 1591  AAACAGCACCTGGAGAAGTACCCGGACTACAAGTACAAGCCTAGGCCAAAGCGCACCTGTCTGGTGGACGGCAA  1664

Query 1551  AAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTG  1624
            .||.|||||.||.||.||.||||||||.||||||||.|||.||.|||||||||||||.|||||||||||.||||
Sbjct 1665  GAAACTGCGTATCGGGGAGTACAAGGCCATCATGCGGAACCGGAGGCAGGAAATGCGACAGTACTTCAACGTTG  1738

Query 1625  GGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCC  1698
            ||||||||||||||||||||||.||.||.||.||.|||||.|||||..|.||||||||||||||.||.|||||.
Sbjct 1739  GGCAACAAGCACAGATCCCCATCGCGACGGCCGGAGTTGTATACCCCAGCGCCATCGCCATGGCAGGAATGCCG  1812

Query 1699  TCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCAC  1772
            |||||||||||||||||.||||||||.||||||||.||||||||.|||||.||||||||.||.|||||||||||
Sbjct 1813  TCCCCTCACCTGCCCTCCGAGCACTCGAGCGTGTCCAGCAGCCCGGAGCCCGGGATGCCCGTGATCCAGAGCAC  1886

Query 1773  TTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATG  1846
            ||||||.|..||.|||||||||||.||.|||||.||||||||.|||||.|||||||||||.|||||.|||||.|
Sbjct 1887  TTACGGCGCCAAGGGAGAGGAGCCCCACATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGAGAGATTTACG  1960

Query 1847  ATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAA  1920
            |.||||||||.|||||.|||||.||.||.|||||.|||||||||||||||||.||||||||.|||||.||||||
Sbjct 1961  AGGAGTACGATGAGGAGGAGGAGGACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACATTGCGGGACAA  2034

Query 1921  GCCAAC  1926
            ||||||
Sbjct 2035  GCCAAC  2040

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