Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11168
Subject:
NM_001352779.2
Aligned Length:
2452
Identities:
2179
Gaps:
260

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGTTCAGCCCGTGGCAGATCCTGTCCCCCGTGCAGTGGGCGAAATGGACGTGGTCTGCGGTACGCGGCGG  74

Query    1  --------------------------------------------ATGAATAATATATTGAAA------------  18
                                                        |.||..|..|| |.|.||            
Sbjct   75  GGCCGCCGGCGAGGACGAGGCTGGCGGGCCCGAGGGCGACCCCGAGGAGGAGGAT-TCGCAAGCCGAGACCAAA  147

Query   19  --CTTAA----AAGCTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGATCCGATCACCTTT  86
              |||.|    .||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  TCCTTGAGTTTCAGCTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGATCCGATCACCTTT  221

Query   87  CAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAGAATCACAAGAAGCTGATG  160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  CAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAGAATCACAAGAAGCTGATG  295

Query  161  AACAGCTTGTAGCAGAAGTGGTTGAAAAATGTTCATCTAAGACTTGTTCTAAACCTTCAGAAAATGAAGTGCCA  234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  AACAGCTTGTAGCAGAAGTGGTTGAAAAATGTTCATCTAAGACTTGTTCTAAACCTTCAGAAAATGAAGTGCCA  369

Query  235  CAGCAGGCCATTGACTCTCACTCAGTCAAGAATTTCAGAGAAGAACCTGAACATGATTTTAGCAAAATTTCCAT  308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  CAGCAGGCCATTGACTCTCACTCAGTCAAGAATTTCAGAGAAGAACCTGAACATGATTTTAGCAAAATTTCCAT  443

Query  309  CGTGAGGCCATTTTCAATAGAAACGAAGGATTCCACGGATATCTCGGCAGTCCTCGGAACAAAAGCAGCTCATG  382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  CGTGAGGCCATTTTCAATAGAAACGAAGGATTCCACGGATATCTCGGCAGTCCTCGGAACAAAAGCAGCTCATG  517

Query  383  GCTGTGTAACTGCAGTCTCAGGCAAGGCTCTGCCTTCCAGCCCGCCAGACGCCCTCCAGGACGAGGCGATGACG  456
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  518  GCTGTGTAACTGCAGTCTCAGGCAAGGCTCTGCCTTCCAGCCCGCCAGACGCCCTCCAGGACGAGGCGATGACA  591

Query  457  GAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTCCTGTCCAGAGCT  530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  592  GAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTCCTGTCCAGAGCT  665

Query  531  TGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAATTGGAGGAGAGT  604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  666  TGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAATTGGAGGAGAGT  739

Query  605  TCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGTCCTGAAGAGTTG  678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  740  TCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGTCCTGAAGAGTTG  813

Query  679  GATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAAAGAAACTCCCGG  752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  GATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAAAGAAACTCCCGG  887

Query  753  CACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCACCTCTCAAGCTTG  826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  CACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCACCTCTCAAGCTTG  961

Query  827  AGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTTGGCAGGAAACTG  900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  AGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTTGGCAGGAAACTG  1035

Query  901  GGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACAGCCTACAGACCC  974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  GGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACAGCCTACAGACCC  1109

Query  975  AGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGTCAGTGGGAGAGCCCCAGCTTCA  1048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1110  AGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGTCAGTGGGAAAGCCCCAGCTTCA  1183

Query 1049  ACCCCTTTGGGAGCCACTCTGTTCTGCAGAACTCCCCACCCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCA  1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  ACCCCTTTGGGAGCCACTCTGTTCTGCAGAACTCCCCACCCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCA  1257

Query 1123  GATAACTTTGACGAATCCATGGATCACTTTAAACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCAC  1196
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  GATAACTTTGACGAATCCATGGATCCCTTTAAACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCAC  1331

Query 1197  TGGTAATCACGTTAATGAAATCTTAGAATCACCCAAGAAGGCAAAGTCGCGTTTAATAAC--------------  1256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct 1332  TGGTAATCACGTTAATGAAATCTTAGAATCACCCAAGAAGGCAAAGTCGCGTTTAATAACGACTACTGAACAAG  1405

Query 1257  ----------------------GAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCA  1308
                                  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406  TGAAATTTCTCTGTTTTCTGTTGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCA  1479

Query 1309  TGTTCTCGGGATGAAGGGGCAGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGA  1382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  TGTTCTCGGGATGAAGGGGCAGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGA  1553

Query 1383  GGAGAAACTGGCATCCACGTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAA--------------------  1436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
Sbjct 1554  GGAGAAACTGGCATCCACGTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGTGAGCCAGAGGAAGACC  1627

Query 1437  -------------------------------------------------------------------AGGCATA  1443
                                                                               |||||||
Sbjct 1628  TGGAGTACTTTGAATGTTCCAATGTTCCTGTGTCTACCATAAATCATGCGTTTTCATCCTCAGAAGCAGGCATA  1701

Query 1444  GAGAAGGAGACGTGCCAGAAGATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAA  1517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702  GAGAAGGAGACGTGCCAGAAGATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAA  1775

Query 1518  GGCCCCTGTGTCGGTGTCCTGTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAG  1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776  GGCCCCTGTGTCGGTGTCCTGTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAG  1849

Query 1592  CCGTGCTCACCTTAATAAGAGAAGAGATAATTACCAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAA  1665
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1850  CCGTGCTCACCTTAATAAGAGAAGAGATAATTACTAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAA  1923

Query 1666  GAGACCCGGCAAGAAGTTTTGGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGA  1739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924  GAGACCCGGCAAGAAGTTTTGGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGA  1997

Query 1740  AGATGAACAAAGGACAAGTATGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGG  1813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998  AGATGAACAAAGGACAAGTATGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGG  2071

Query 1814  CTGACCTTAACTCTGTGGAAAGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAA  1887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072  CTGACCTTAACTCTGTGGAAAGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAA  2145

Query 1888  GGGTTCAAGAAGAATGAAGAAGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCA  1961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146  GGGTTCAAGAAGAATGAAGAAGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCA  2219

Query 1962  GCGATACCAGGCCCTGAAAATCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAA  2035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220  GCGATACCAGGCCCTGAAAATCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAA  2293

Query 2036  CAAAAGCAAAGGCTGAGAGTGCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAA  2109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294  CAAAAGCAAAGGCTGAGAGTGCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAA  2367

Query 2110  AGGGCCCTGCAGCAGAAGAACCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGG  2183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368  AGGGCCCTGCAGCAGAAGAACCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGG  2441

Query 2184  AAAGACTGAC  2193
            ||||||||||
Sbjct 2442  AAAGACTGAC  2451

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