Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11168
Subject:
NM_001352801.2
Aligned Length:
2224
Identities:
1064
Gaps:
1121

Alignment

Query    1  ATGAATAATATATTGAAACTTAAAAGCTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAGAATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATGTTCATCTAAGACTTGTTCTAAACCTTCAGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGAATTTCAGAGAAGAACCTGAACATGATTTTAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGATTCCACGGATATCTCGGCAGTCCTCGGAACAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCTGCCTTCCAGCCCGCCAGACGCCCTCCAGGAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAGGCGATGACGGAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCAC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  CTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTT  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACA  962
                                                       |||||.|       ||||             
Sbjct    1  -------------------------------------------ATGGCGT-------TCAG-------------  11

Query  963  GCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGT-CAGTGGGAG  1035
                      ||.||||||      |..|||.||.|||                        || |||||||.|
Sbjct   12  ----------CCCGTGGCA------GATCCTGTCCCCC------------------------GTGCAGTGGGCG  45

Query 1036  AGCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAACTC------CCCAC----------------  1087
            |           ||      |||..|      ||.|||||.|.||.|      .||.|                
Sbjct   46  A-----------AA------TGGACG------TGGTCTGCGGTACGCGGCGGGGCCGCCGGCGAGGACGAGGCT  96

Query 1088  ------CCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCAGATAACTTTGACGAATCCATGGA-TCACTTTAA  1154
                  |||        ||||||            |||||.||      .||.||      ||| ||.|   ||
Sbjct   97  GGCGGGCCC--------GAGGGC------------GACCCCGA------GGAGGA------GGATTCGC---AA  135

Query 1155  ACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCAC  1228
            .||.|    ||||    .||.|..|||.|||          |.||     ||  ||.||||             
Sbjct  136  GCCGA----GACC----AAATCCTTGAGTTT----------CAGG-----AC--TACTGAA-------------  171

Query 1229  CCAAGAAGGCAAAGTCGC-GTTTAATAACGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCT  1301
             ||||  .|.||..||.| ||||..|...|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172  -CAAG--TGAAATTTCTCTGTTTTCTGTTGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCT  242

Query 1302  GGATGCATGTTCTCGGGATGAAGGGGCAGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTA  1375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GGATGCATGTTCTCGGGATGAAGGGGCAGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTA  316

Query 1376  CTGATGAGGAGAAACTGGCATCCACGTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAG  1449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  CTGATGAGGAGAAACTGGCATCCACGTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAG  390

Query 1450  GAGACGTGCCAGAAGATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCC  1523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  391  GAGACGTGCCAGAAGATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCC  464

Query 1524  TGTGTCGGTGTCCTGTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGC  1597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  465  TGTGTCGGTGTCCTGTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGC  538

Query 1598  TCACCTTAATAAGAGAAGAGATAATTACCAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACC  1671
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  TCACCTTAATAAGAGAAGAGATAATTACTAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACC  612

Query 1672  CGGCAAGAAGTTTTGGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGA  1745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  613  CGGCAAGAAGTTTTGGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGA  686

Query 1746  ACAAAGGACAAGTATGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACC  1819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  687  ACAAAGGACAAGTATGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACC  760

Query 1820  TTAACTCTGTGGAAAGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTC  1893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  761  TTAACTCTGTGGAAAGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTC  834

Query 1894  AAGAAGAATGAAGAAGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATA  1967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  835  AAGAAGAATGAAGAAGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATA  908

Query 1968  CCAGGCCCTGAAAATCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAG  2041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  909  CCAGGCCCTGAAAATCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAG  982

Query 2042  CAAAGGCTGAGAGTGCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCC  2115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  983  CAAAGGCTGAGAGTGCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCC  1056

Query 2116  CTGCAGCAGAAGAACCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGAC  2189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057  CTGCAGCAGAAGAACCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGAC  1130

Query 2190  TGAC  2193
            ||||
Sbjct 1131  TGAC  1134

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