Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11249
Subject:
XR_377290.3
Aligned Length:
2749
Identities:
1362
Gaps:
1259

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAAATGTTCATAATGTGGTTTTATTTTTATTCATTTTTCATTAGGTTCTGATGAAGTACGCCAAAGTTAAACTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGAATTGCTTATATGTTAAAAACAAAAACAAAACGAGTAAAGACTTGTTTGAATGGCGATCACTTGGAAAATA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAAGAAAAAGAAATACGTATGTTGTCAGTTTCTCTGGAAAACCCTTCACCGTGCTGTTTGGGAAAAACAAAAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAATAGCAGAAGCTAGTACAAAGGGAACCAAAATTTCTCTTCAGGCCTAATGAGCAGGAGTGCATCTCTTCTAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCGTCTGGATTTCATTGATACCTTTAAGCCCCAGTCCTGGGAGACACAGCTTTAAGACTCCTGGAAACCTTGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTACGTCCTGGAAATCTTGATTGCAACCGAATTCTGACTCCACTTTAAGGTAGACCTAGGAACGCTTTGGGCCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAGTTTCCCTCCGTCTATCACCCCAGGACCTGGCAACTGTTGCAGGCTCCCCCCCCAGACATTACAAAGTGTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAGCACGCCCGGCTCTCGGAAGCGCTCTACACCCGCGAGCTGTTACGTCAGTGGGTCCCTCGGCGGCGCCCGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGGAGAGTGCAGGGACCGGGCCCACGTGACCG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTCCACGAAGGCCACCGGCGGGGGCTCGGAGCGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGGCGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTCCGGGGACGCCGGGCCCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGCCGAC  814

Query    1  ------------------------------------ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAA  38
                                                |||||.||.||||.|.|||||||.||||||||||||||
Sbjct  815  AGCGAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTGGAGCAGCTCAA  888

Query   39  GTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCC  112
            |||||||||.||.|||||.|||||.||||||||||||||||||||||||.|||||||.||||||||||||||||
Sbjct  889  GTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTCCTCGTGCTCTTCCTGGTCTACATCC  962

Query  113  TGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTC  186
            ||.|||||||..|||..||||||||||||.||||||||||||||||||||||||||||.|||||.||.||||||
Sbjct  963  TGAGGGTGCCCCTGAGGATCAACGACAACCTGAGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTC  1036

Query  187  TACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAA  260
            |||||||||||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1037  TACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAA  1110

Query  261  ATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACT  334
            .||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTATGGAACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACT  1184

Query  335  CTTCCAACA---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGG  387
            |||||||.|                     |||||||||||||.||.|||||||||||||||||||||||||||
Sbjct 1185  CTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGTATGG  1258

Query  388  CGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTAC  461
            |||||||||||.|||.|.|||||||||||.|||||.||||||||.||||||||.|||||||||||||||||.||
Sbjct 1259  CGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTCTGAC  1332

Query  462  TTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCG  535
            .||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.||.|
Sbjct 1333  CTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTG  1406

Query  536  CAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTG  609
            ||||||||||||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||||||
Sbjct 1407  CAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTG  1480

Query  610  GAGATAAATG----------------------------------------------------------------  619
            ||||||||.|                                                                
Sbjct 1481  GAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTT  1554

Query  620  -----AGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTAT  688
                 |||||||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||.|.|
Sbjct 1555  ACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAACTCT  1628

Query  689  TTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTAT  762
            ||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||.|||||||||
Sbjct 1629  TTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTAT  1702

Query  763  GAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACT  836
            |||||.|||||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|||||
Sbjct 1703  GAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACT  1776

Query  837  CGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATA  910
            .||.||||||||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.||||||||||
Sbjct 1777  TGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATA  1850

Query  911  TCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTAT  984
            |||||||.||||||.|||||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||
Sbjct 1851  TCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGTAT  1924

Query  985  GATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGA  1058
            |||||||||||||||||||||||.||.|||||||||||||||||.||..|||||||||||||||||||||||||
Sbjct 1925  GATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGA  1998

Query 1059  CAAATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATA  1132
            ||||||||||||.||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||.||.|
Sbjct 1999  CAAATTCTCTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACA  2072

Query 1133  GAGCTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACAT  1206
            |||||||||||||.|||||.||.||||||||                                           
Sbjct 2073  GAGCTGTGGAATTTAATCCACACGTGCCAAA-------------------------------------------  2103

Query 1207  ATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGG  1280
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 1281  GGCTTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACC  1354
                                              |||||.|||||||||||.||||||.||||.|||||.||||
Sbjct 2104  ----------------------------------ACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACC  2143

Query 1355  TATTTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTT  1428
            ||||||||||.|||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||
Sbjct 2144  TATTTTATCCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTT  2217

Query 1429  TACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCT  1502
            ||||||||||||||.|||||||||||.||.|||||.|||||||||.|.||.|||||||||||||||||||||||
Sbjct 2218  TACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCT  2291

Query 1503  CCTGACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAA  1576
            |||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.|
Sbjct 2292  CCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGA  2365

Query 1577  ACTTTGTCATGGAGAAAGTGGAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATC---------  1641
            |||||||.||||||||||||||.|||||||||||.||||||.|||||||.|||||.|||||||||         
Sbjct 2366  ACTTTGTTATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGC  2439

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2440  CTCCCATCCTTCACTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGA  2513

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2514  CTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTT  2587

Query 1642  -----------  1641
                       
Sbjct 2588  GTTGTACAAAA  2598

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