Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11249
Subject:
XR_377291.3
Aligned Length:
2894
Identities:
1475
Gaps:
1267

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCACTAATGCGTTCATGGGCATGTGAATGTCCCAAACATATGTAGCATGTGTCTTTTCATCTACTTGTAATTAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATAAATGTACAGCCTTAGATGTCAGCCTTCCATAATTTAGAGATAATAATCTGGAGTCCTTCTGAAATTGCTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TAAATGTAGATCATTTTTCTCATTTCAGATGCTCCTAATTCCCTTGCAAAGCTTTATTTGCTGTAATATAACCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAACCCTGATCTGCATGTCATTGTGGTTAGCTGATAGAAGGCCAGTATTTAAATTTCTTTGAGGTCTCTTGCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGTGGCGTCACAGGATGAAGAGCTCTTCAGGAGGGGGAATGTGCTTGTGGTTTTTGGTCTTGTGCATTTTGTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACAAAGGAATTCCCTTTTGAATCGCGCTGTTCCCTTGAAACCCTGGAGCCTCTGGTTCAAGCAGCGCAGTCAGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTGTGCAGTGTCCCTGACGTCATCCGGCGTATGCATAAGCTCTGCTATTGTCTTACCGCTAGAGCAGGGCTGAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACTGCAGTCTCTGCTGCTGCTCGCAGACCTGCCCTGCGCTAGCTACCTAGCCCTGCCTCACTGCATCCCTCAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAGCCGCGGCAGCCTTTCCTTGCCTGCTGGATTTTGAGAAGCAGCTCTTCGATTTGGGCTGGTGTAGGAGCCCT  666

Query    1  -------------------ATGGCTGAAGCGGCCA-CGGGCTTTCTGG-AGC-------AGCTCAAGTCCTGCA  46
                               |..|||||||||..|| .||....||||| |||       |||||  |..|||||
Sbjct  667  GGCTTTCCATTCTCGAGAGAAAGCTGAAGCGCTCAGAGGAGAATCTGGCAGCTGGACATAGCTC--GGACTGCA  738

Query   47  TAGTTTGGTCTT--GGACGTAT-CTGTGGA-CCG---------TGTGGT------------------TCTT-CA  88
            |.||.||| |||  .|||...| |||||.| |||         |.||.|                  |||| ||
Sbjct  739  TTGTCTGG-CTTCATGACCCCTGCTGTGTAGCCGGCTCATCTCTTTGCTCTCAGGAGCACATGCACATCTTACA  811

Query   89  TCGTGCTA-TTCC-------------------TGGTCTACAT--------------CCTGCGGGTGCC------  122
            |..|.||| ||||                   |..|||| ||              |||.|.||.|||      
Sbjct  812  TTTTCCTACTTCCTTTTTCTTTTTCTTTCCCTTCTTCTA-ATTTTTTTTTAAAGCACCTTCTGGAGCCAGCCAT  884

Query  123  -TTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCC  195
             ||||..|.|.|     |.|||     ||.|||||||||||||||||||.|||||.||.|||||||||||||||
Sbjct  885  GTTTGGTACTGA-----ATCTT-----CATTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCC  948

Query  196  CTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAAC  269
            ||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||.||.|||||
Sbjct  949  CTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAAC  1022

Query  270  TTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACA  343
            .||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1023  ATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAATA  1096

Query  344  ---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCA  396
                                 |||||||||||||.||.||||||||||||||||||||||||||||||||||||
Sbjct 1097  ATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCA  1170

Query  397  CTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGA  470
            ||.|||.|.|||||||||||.|||||.||||||||.||||||||.|||||||||||||||||.||.||||||||
Sbjct 1171  CTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTCTGACCTACTATGA  1244

Query  471  CATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAA  544
            ||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.||.||||||||||
Sbjct 1245  CATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAA  1318

Query  545  TAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAAT  618
            |||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||||||||||||||.
Sbjct 1319  TAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAAC  1392

Query  619  G---------------------------------------------------------------------AGTG  623
            |                                                                     ||||
Sbjct 1393  GAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTG  1466

Query  624  TGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGG  697
            |||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||.|.||||||||||
Sbjct 1467  TGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAACTCTTTAAGCAGG  1540

Query  698  CCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAA  771
            |||||||||||||||||||.||||||||.||||||||||||||||||||||||||.||||||||||||||.|||
Sbjct 1541  CCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAA  1614

Query  772  CATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGAC  845
            ||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|||||.||.|||||
Sbjct 1615  CACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGAC  1688

Query  846  CAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAA  919
            |||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.|||||||||||||||||.|
Sbjct 1689  CAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATATCCATGAGA  1762

Query  920  ACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATA  993
            |||||.|||||||.|||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763  ACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATA  1836

Query  994  AGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAA------  1061
            ||||||||||||||.||.|||||||||||||||||.||..||||||||||||||||||||||||||||      
Sbjct 1837  AGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATCGCC  1910

Query 1062  --------------------------------------------------------------------------  1061
                                                                                      
Sbjct 1911  AGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAGGGCCAGGGTTGCCACAGC  1984

Query 1062  --------------------------------------------------------ATTCTCTCCTGAGGCTGC  1079
                                                                    |||||||||.||||||||
Sbjct 1985  TTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAGATTCTCTCCAGAGGCTGC  2058

Query 1080  ATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTC  1153
            .||||||.||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||.|
Sbjct 2059  GTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCAC  2132

Query 1154  ATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGT  1227
            |.|||||||||||.||||||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||
Sbjct 2133  ACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAAGAGAGGAGACAGT  2206

Query 1228  GAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTG  1301
            |||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||||||
Sbjct 2207  GAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGAATCTCTTGCATTG  2280

Query 1302  TACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCT  1375
            ||||||||||||||||||.|||||||||||.||||||.||||.|||||.||||||||||||||.||||||||||
Sbjct 2281  TACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCCATACCCAATCT  2354

Query 1376  GTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCC  1449
            |||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||.||||||
Sbjct 2355  GTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCC  2428

Query 1450  TTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGA  1523
            |||||.||.|||||.|||||||||.|.||.||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 2429  TTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGA  2502

Query 1524  ACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACTTTGTCATGGAGAAAGTGG  1597
            |||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||
Sbjct 2503  ACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGG  2576

Query 1598  AGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATC------------------------------  1641
            |.|||||||||||.||||||.|||||||.|||||.|||||||||                              
Sbjct 2577  AAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCACTTTCCAC  2650

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2651  ACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATT  2724

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2725  CTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATG  2798

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2799  TTCAGTTCTATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTG  2872

Query 1642  --------  1641
                    
Sbjct 2873  TATTGCAA  2880

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