Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11249
Subject:
XR_868763.2
Aligned Length:
2981
Identities:
1506
Gaps:
1340

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGGGAAAATGTTCATAATGTGGTTTTATTTTTATTCATTTTTCATTAGGTTCTGATGAAGTACGCCAAAGTTAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTAGGGAATTGCTTATATGTTAAAAACAAAAACAAAACGAGTAAAGACTTGTTTGAATGGCGATCACTTGGAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATAGGAAGAAAAAGAAATACGTATGTTGTCAGTTTCTCTGGAAAACCCTTCACCGTGCTGTTTGGGAAAAACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAACAAATAGCAGAAGCTAGTACAAAGGGAACCAAAATTTCTCTTCAGGCCTAATGAGCAGGAGTGCATCTCTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTAGCTCGTCTGGATTTCATTGATACCTTTAAGCCCCAGTCCTGGGAGACACAGCTTTAAGACTCCTGGAAACC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTGTTTACGTCCTGGAAATCTTGATTGCAACCGAATTCTGACTCCACTTTAAGGTAGACCTAGGAACGCTTTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCCTCAGTTTCCCTCCGTCTATCACCCCAGGACCTGGCAACTGTTGCAGGCTCCCCCCCCAGACATTACAAAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGTGGAGCACGCCCGGCTCTCGGAAGCGCTCTACACCCGCGAGCTGTTACGTCAGTGGGTCCCTCGGCGGCGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGGAGAGTGCAGGGACCGGGCCCACGTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAGCGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGAGCTCCGGGGACGCCGGGCCCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGC  814

Query    1  ----------------------------------------ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGC  34
                                                    |||||.||.||||.|.|||||||.||||||||||
Sbjct  815  CGACAGCGAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTGGAGCAGC  888

Query   35  TCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTAC  108
            |||||||||||||.||.|||||.|||||.||||||||||||||||||||||||.|||||||.||||||||||||
Sbjct  889  TCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTCCTCGTGCTCTTCCTGGTCTAC  962

Query  109  ATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAA  182
            ||||||.|||||||..|||..||||||||||||.||||||||||||||||||||||||||||.|||||.||.||
Sbjct  963  ATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAA  1036

Query  183  GTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTC  256
            |||||||||||||||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 1037  GTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTC  1110

Query  257  GCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC  330
            ||||.||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GCAAGTATGGAACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC  1184

Query  331  AACTCTTCCAACA---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGT  383
            |||||||||||.|                     |||||||||||||.||.|||||||||||||||||||||||
Sbjct 1185  AACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGT  1258

Query  384  ATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTC  457
            |||||||||||||||.|||.|.|||||||||||.|||||.||||||||.||||||||.||||||||||||||||
Sbjct 1259  ATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTC  1332

Query  458  TTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGT  531
            |.||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.
Sbjct 1333  TGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGC  1406

Query  532  CCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGC  605
            ||.|||||||||||||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||
Sbjct 1407  CCTGCAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGC  1480

Query  606  CTTGGAGATAAATG------------------------------------------------------------  619
            ||||||||||||.|                                                            
Sbjct 1481  CTTGGAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAAT  1554

Query  620  ---------AGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAA  684
                     |||||||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||
Sbjct 1555  TGTTACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAA  1628

Query  685  TTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCA  758
            .|.|||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||.|||||
Sbjct 1629  CTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCA  1702

Query  759  GTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAA  832
            |||||||||.|||||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|
Sbjct 1703  GTATGAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGA  1776

Query  833  GACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTC  906
            ||||.||.||||||||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.||||||
Sbjct 1777  GACTTGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTC  1850

Query  907  AATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAA  980
            |||||||||||.||||||.|||||||.|||||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct 1851  AATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAA  1924

Query  981  GTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCT  1054
            |||||||||||||||||||||||||||.||.|||||||||||||||||.||..|||||||||||||||||||||
Sbjct 1925  GTATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCT  1998

Query 1055  CTGACAA-------------------------------------------------------------------  1061
            |||||||                                                                   
Sbjct 1999  CTGACAAATCGCCAGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAGGGCCA  2072

Query 1062  ---------------------------------------------------------------------ATTCT  1066
                                                                                 |||||
Sbjct 2073  GGGTTGCCACAGCTTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAGATTCT  2146

Query 1067  CTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTG  1140
            ||||.||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||.||.|||||||||
Sbjct 2147  CTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTG  2220

Query 1141  GAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAA  1214
            |||||.|||||.||.|||||||||||.||||||||||||||||||||||||||.||.||||||||.||||||||
Sbjct 2221  GAATTTAATCCACACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAA  2294

Query 1215  GAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGA  1288
            ||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 2295  GAGAGGAGACAGTGAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGA  2368

Query 1289  ATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTAT  1362
            ||||.||||||||||||||||||||||||||.|||||||||||.||||||.||||.|||||.||||||||||||
Sbjct 2369  ATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTAT  2442

Query 1363  CCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAA  1436
            ||.|||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct 2443  CCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAA  2516

Query 1437  GAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACAC  1510
            ||||||.|||||||||||.||.|||||.|||||||||.|.||.|||||||||||||||||||||||||||||||
Sbjct 2517  GAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACAC  2590

Query 1511  ATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACTTTGTC  1584
            |||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||.
Sbjct 2591  ATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTT  2664

Query 1585  ATGGAGAAAGTGGAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATC-----------------  1641
            ||||||||||||||.|||||||||||.||||||.|||||||.|||||.|||||||||                 
Sbjct 2665  ATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATC  2738

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2739  CTTCACTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAA  2812

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2813  AAGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACA  2886

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2887  AAATTTATTGATGTTCAGTTCTATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAA  2960

Query 1642  ---------------------  1641
                                 
Sbjct 2961  ATAAACTTTTGTGTATTGCAA  2981

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