Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11249
Subject:
XR_868764.2
Aligned Length:
2591
Identities:
875
Gaps:
1624

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGGGAAAATGTTCATAATGTGGTTTTATTTTTATTCATTTTTCATTAGGTTCTGATGAAGTACGCCAAAGTTAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTAGGGAATTGCTTATATGTTAAAAACAAAAACAAAACGAGTAAAGACTTGTTTGAATGGCGATCACTTGGAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATAGGAAGAAAAAGAAATACGTATGTTGTCAGTTTCTCTGGAAAACCCTTCACCGTGCTGTTTGGGAAAAACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAACAAATAGCAGAAGCTAGTACAAAGGGAACCAAAATTTCTCTTCAGGCCTAATGAGCAGGAGTGCATCTCTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTAGCTCGTCTGGATTTCATTGATACCTTTAAGCCCCAGTCCTGGGAGACACAGCTTTAAGACTCCTGGAAACC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTGTTTACGTCCTGGAAATCTTGATTGCAACCGAATTCTGACTCCACTTTAAGGTAGACCTAGGAACGCTTTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCCTCAGTTTCCCTCCGTCTATCACCCCAGGACCTGGCAACTGTTGCAGGCTCCCCCCCCAGACATTACAAAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGTGGAGCACGCCCGGCTCTCGGAAGCGCTCTACACCCGCGAGCTGTTACGTCAGTGGGTCCCTCGGCGGCGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGGAGAGTGCAGGGACCGGGCCCACGTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAGCGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGAGCTCCGGGGACGCCGGGCCCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGC  814

Query    1  ----------------------------------------ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGC  34
                                                    |||||.||.||||.|.|||||||.||||||||||
Sbjct  815  CGACAGCGAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTGGAGCAGC  888

Query   35  TCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTAC  108
            |||||||||||||.||.|||||.|||||.||||||||||||||||||||||||.|||||||.||||||||||||
Sbjct  889  TCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTCCTCGTGCTCTTCCTGGTCTAC  962

Query  109  ATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAA  182
            ||||||.|||||||..|||..||||||||||||.||||||||||||||||||||||||||||.|||||.||.||
Sbjct  963  ATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAA  1036

Query  183  GTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTC  256
            |||||||||||||||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 1037  GTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTC  1110

Query  257  GCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC  330
            ||||.||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GCAAGTATGGAACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC  1184

Query  331  AACTCTTCCAACA---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGT  383
            |||||||||||.|                     |||||||||||||.||.|||||||||||||||||||||||
Sbjct 1185  AACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGT  1258

Query  384  ATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTC  457
            |||||||||||||||.|||.|.|||||||||||.|||||.||||||||.||||||||.||||||||||||||||
Sbjct 1259  ATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTC  1332

Query  458  TTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGT  531
            |.||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.
Sbjct 1333  TGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGC  1406

Query  532  CCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGC  605
            ||.|||||||||||||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||
Sbjct 1407  CCTGCAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGC  1480

Query  606  CTTGGAGATAAATG------------------------------------------------------------  619
            ||||||||||||.|                                                            
Sbjct 1481  CTTGGAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAAT  1554

Query  620  ---------AGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAA  684
                     |||||||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||
Sbjct 1555  TGTTACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAA  1628

Query  685  TTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCA  758
            .|.|||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||.|||||
Sbjct 1629  CTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCA  1702

Query  759  GTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAA  832
            |||||||||.|||||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|
Sbjct 1703  GTATGAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGA  1776

Query  833  GACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTC  906
            ||||.||.||||||||.|||||||||||.||||||||||||                                 
Sbjct 1777  GACTTGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGAT---------------------------------  1817

Query  907  AATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAA  980
                                                                                      
Sbjct 1818  --------------------------------------------------------------------------  1817

Query  981  GTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCT  1054
                    |||||||||||||||||||.||.|||||||||||||||||.||..|||||||||||||||||||||
Sbjct 1818  --------ATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCT  1883

Query 1055  CTGACAAAT------TCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAG  1122
            |||||||||      |..||.||   ||..|||||..                                     
Sbjct 1884  CTGACAAATCGCCAGTACCTACT---GCAACATCTTT-------------------------------------  1917

Query 1123  GCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACC  1196
                                                                                      
Sbjct 1918  --------------------------------------------------------------------------  1917

Query 1197  CCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGA  1270
                                                                                      
Sbjct 1918  --------------------------------------------------------------------------  1917

Query 1271  GAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAA  1344
                                                                                      
Sbjct 1918  --------------------------------------------------------------------------  1917

Query 1345  AAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGA  1418
                                                                                      
Sbjct 1918  --------------------------------------------------------------------------  1917

Query 1419  AGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCA  1492
                                                                                      
Sbjct 1918  --------------------------------------------------------------------------  1917

Query 1493  TGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTT  1566
                                                                                      
Sbjct 1918  --------------------------------------------------------------------------  1917

Query 1567  GCCCCCTTAAACTTTGTCATGGAGAAAGTGGAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGAT  1640
                                                                                      
Sbjct 1918  --------------------------------------------------------------------------  1917

Query 1641  C  1641
             
Sbjct 1918  -  1917

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