Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11391
• Subject: XM_017028596.2
• Aligned Length: 1379
• Identities: 656
• Gaps: 640

Alignment

Query    1  ATGAATCCACAGATCAGAAATCCGATGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAATCCACAGATCAGAAATCCGATGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACC  74

Query   75  CATCCTCTATGGTCGGAGCTACACTTGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CATCCTCTATGGTCGGAGCTACACTTGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTT  148

Query  149  GGGACACAGGGGTCTTTCGAGGCC------------------------------------AGGTGTATTTCGAG  186
            ||||||||||||||||||||||||                                    |||||||||||..|
Sbjct  149  GGGACACAGGGGTCTTTCGAGGCCCGGTACTACCCAAACGTCAGTCGAATCACAGGCAGGAGGTGTATTTCCGG  222

Query  187  CCTCAGTACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCA  260
            ..|.||.||||||||||||||||||||.|.|||||||||||||||||||..|||||||||.|||.|.|.|||||
Sbjct  223  TTTGAGAACCACGCAGAAATGTGCTTCTTATCTTGGTTCTGTGGCAACCGACTGCCTGCTAACAGGCGCTTCCA  296

Query  261  GATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTGTCTGAGCACC  334
            ||||||||||||||||||.||||.||||||||.|..||||||||.||||.||.||.|||||.||.|||||||||
Sbjct  297  GATCACCTGGTTTGTATCATGGAACCCCTGCCTGCCCTGTGTGGTGAAGGTGACCAAATTCTTGGCTGAGCACC  370

Query  335  CCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGC  408
            ||||||||||||||||||||||.|||||||||||||||||||||.||||.|||||||..||..|||.||||..|
Sbjct  371  CCAATGTCACCCTGACCATCTCTGCCGCCCGCCTCTACTACTACCGGGATAGAGATTGGCGGTGGGTGCTCCTC  444

Query  409  AGGCTGAGTCAGGCAGGAGCCCGCGTGAAGATCATGGACTATGA------------------------------  452
            ||||||..|.|||||||.|||||.||||||||||||||||||||                              
Sbjct  445  AGGCTGCATAAGGCAGGGGCCCGTGTGAAGATCATGGACTATGAAGGTGAGAGGTGCAGGGGTCAGGGGAGCAT  518

Query  453  --------------------------------------------------------------------------  452
                                                                                      
Sbjct  519  GACGGGGAGGAACAGCCTCAGAGATGGATGGATCTGCAATGCCATGGCTGGGGGTGTTCCAGGGCAGCCTGCAG  592

Query  453  --------------------------------------------------------------------------  452
                                                                                      
Sbjct  593  GGGTGGGGCTGGCACTGATTGCAACTGACAGCCAGGAGACCAGGCCTGGGAGGGCAGGCCCAGGGTCAGGGGAG  666

Query  453  -----------------------------AGAATTTGCATACTGCTGGGAAAACTTTGTGTACAATGAAGGTCA  497
                                         |||.||||||||||||||||||||||||||||.||||||||||||
Sbjct  667  AGCCTGAGTGCTTCCCACCTCTTCATCTCAGACTTTGCATACTGCTGGGAAAACTTTGTGTGCAATGAAGGTCA  740

Query  498  GCAATTCATGCCTTGGTACAAATTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCTC----  567
            ||.|||||||||||||||||||||||||||.||||||||||.||||||||||||||||||||||||||||    
Sbjct  741  GCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATCCCTGCACCGCACGCTAAAGGAGATTCTCAGAA  814

Query  568  ---------AGGC------------------------------TAAGAATCTTCT------CTGTG--------  588
                     ||||                              |||.||.||.||      |||||        
Sbjct  815  ACCCGATGGAGGCAATGTACCCACACATATTCTACTTCCACTTTAAAAACCTACTGAAAGCCTGTGGTCGGAAC  888

Query  589  -------------GCTT-----------TTA------------CGGCCGCCATGCGG-AGCTGCGCTTCTTGGA  625
                         ||||           |||            |.||.|.|.|.||| ||..|.||.||||   
Sbjct  889  GAAAGCTGGCTGTGCTTCACCATGGAAGTTACAAAGCACCACTCAGCTGTCTTCCGGAAGAGGGGCGTCTT---  959

Query  626  CC---------TGGTTCCT-----------TCTTTGCAG----------------TTGGACCCG-GCCCAGAT-  661
            ||         |||.||||           || .|||||                ||||..|.| |.|.|.|| 
Sbjct  960  CCGAAACCAGGTGGATCCTGAGACCCATTGTC-ATGCAGAAAGGTGCTTCCTCTCTTGGTTCTGTGACGACATA  1032

Query  662  -----------------CTACAGGGTCACTTGGTTCATCTCCTGGAGCCCCTGCTTCTCCTGGGGCTGTGCCGG  718
                             ||||..||||||.||||.||..||.||||||||.|||    ||.|.|  |||||.||
Sbjct 1033  CTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGC----CCAGAG--TGTGCAGG  1100

Query  719  GGAAGTGCGTGCGTTCCT--TCAGGAGAACACA--CACG-----------------------------------  753
            |||.|||...|.||||||  .||||    ||||  .|||                                   
Sbjct 1101  GGAGGTGGCCGAGTTCCTGGCCAGG----CACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTGCTAC  1170

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1171  TTCTGGGATACAGATTACCAGGAGGGGCTCTGCAGCCTGAGTCAGGAAGGGGCCTCCGTGAAGATCATGGGCTA  1244

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1245  CAAAGATTTTGTATCTTGTTGGAAAAACTTTGTGTACAGTGATGATGAGCCATTCAAGCCTTGGAAGGGACTAC  1318

Query  754  -----------------------------------------------  753
                                                           
Sbjct 1319  AAACCAACTTTCGACTTCTGAAAAGAAGGCTACGGGAGATTCTCCAG  1365